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21 July 2025: This instance at RAL is read-only. Please do not try submitting new workflows for now.

Workflow 7977, Stage 1

Priority50
Processors1
Wall seconds43200
Image/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes4194304000 (4000 MiB)
Max distance for inputs30.0
Enabled input RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites BR_CBPF, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Lancaster, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scopeusertests
Events for this stage

Output patterns

 DestinationPatternLifetimeFor next stageRSE expression
1https://fndcadoor.fnal.gov:2880/dune/scratch/users/imawby/splitting_nu_0/07977/1*HierarchyRecoPerformance*.root

Environment variables

NameValue
INPUT_TAR_DIR_LOCAL/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/a3dc3b427f8338fdae69f3667db9aa2c61258e2b
NUM_EVENTS100

File states

Total filesFindingUnallocatedAllocatedOutputtingProcessedNot foundFailed
100001430085700

Job states

TotalSubmittedStartedProcessingOutputtingFinishedNotusedAbortedStalledJobscript errorOutputting failedNone processed
14400000119900239200
Files processed00100100200200300300400400500500600600700700800800Jun-27 11:00Jun-27 12:00Jun-27 13:00Files processedBin start timesNumber per binUK_BristolUS_ColoradoUK_RAL-PPDUS_UChicagoES_PICUK_SheffieldUS_WisconsinCZ_FZUUK_OxfordUK_LancasterUK_RAL-Tier1US_FNAL-FermiG…US_FNAL-FermiGridUK_QMULUK_EdinburghUK_DurhamUK_Manchester
Replicas per RSE1000478.91495889807953205.302155864189841000294.0383811204655275.710446316897750318.46951451702074143.94291369570648329.8335185350666136.3297369372531344341.35035764440744130.6477745512538341352.55538445253984126.7419321066604339363.45315065824155124.2955021087191535373.7183019063742123.121362362001864379.16190444480213122.92849200275281379.8603158357401122.92509700062219Replicas per RSEDUNE_US_FNAL_DISK_S…DUNE_US_FNAL_DISK_STAGE (44%)FNAL_DCACHE (44%)PRAGUE (2%)NIKHEF (2%)RAL-PP (1%)SURFSARA (1%)RAL_ECHO (1%)QMUL (1%)DUNE_FR_CCIN2P3_DIS…DUNE_FR_CCIN2P3_DISK (0%)DUNE_ES_PIC (0%)

RSEs used

NameInputsOutputs
DUNE_US_FNAL_DISK_STAGE8360
PRAGUE500
NIKHEF480
RAL-PP440
SURFSARA410
RAL_ECHO390
QMUL350
DUNE_FR_CCIN2P3_DISK30
DUNE_ES_PIC20
None0857

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

SiteAllocatedOutputting
US_FNAL-FermiGrid1600
US_UChicago480
UK_Manchester200
US_Wisconsin60
UK_Lancaster30
UK_RAL-PPD10
US_Colorado10

Jobscript

#!/bin/bash

# FCL file and DUNE software version/qualifier to be used
FCL_FILE=${FCL_FILE:-$INPUT_TAR_DIR_LOCAL/secondaryVertexing.fcl}
DUNE_VERSION=${DUNE_VERSION:-v10_08_00d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}

# Make sure that we're not beeing greedy with resources...
if [ -z ${JUSTIN_PROCESSORS} ]; then
 JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS}
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS}
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS}
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS}
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}

# setup the DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
source $INPUT_TAR_DIR_LOCAL/setup-grid
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
mrbslp

export FW_SEARCH_PATH=.:${INPUT_TAR_DIR_LOCAL}:$FW_SEARCH_PATH
export FHICL_FILE_PATH=.:${INPUT_TAR_DIR_LOCAL}:$FHICL_FILE_PATH

# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
 events_option="-n $NUM_EVENTS"
fi

# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`

if [ "$did_pfn_rse" = "" ] ; then
  echo "Nothing to process - exit jobscript"
  exit 0
fi

# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt

# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"

# Construct outFile from input $pfn 
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`

campaign="justIN.w${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"

# Here is where the LArSoft command is call it 
(
# Do the scary preload stuff in a subshell!
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so

lar -c $FCL_FILE $events_option "$pfn" > ${fname}_reco_${now}.log 2>&1
)

# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"

echo '=== Start last 100 lines of lar log file ==='
tail -100 ${fname}_reco_${now}.log
echo '=== End last 100 lines of lar log file ==='

mv HierarchyRecoPerformance.root HierarchyRecoPerformance_${fname}.root

if [ $larExit -eq 0 ] ; then
  # Success !
  echo "$pfn" > justin-processed-pfns.txt
  jobscriptExit=0
else
  # Oh :(
  jobscriptExit=1
fi

# Create compressed tar file with all log files 
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
exit $jobscriptExit
justIN time: 2025-08-14 16:31:52 UTC       justIN version: 01.03.02