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21 July 2025: This instance at RAL is read-only. Please do not try submitting new workflows for now.

Workflow 7963, Stage 1

Priority50
Processors1
Wall seconds43200
Image/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes4194304000 (4000 MiB)
Max distance for inputs30.0
Enabled input RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites BR_CBPF, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Lancaster, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scopeusertests
Events for this stage

Output patterns

 DestinationPatternLifetimeFor next stageRSE expression
1https://fndcadoor.fnal.gov:2880/dune/scratch/users/imawby/sara_nutau_0/07963/1*Particles*.root

Environment variables

NameValue
INPUT_TAR_DIR_LOCAL/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/36201de8534110585b0e31a39388b50aa48e26ed
NUM_EVENTS100

File states

Total filesFindingUnallocatedAllocatedOutputtingProcessedNot foundFailed
10000000963037

Job states

TotalSubmittedStartedProcessingOutputtingFinishedNotusedAbortedStalledJobscript errorOutputting failedNone processed
2650000021940701531378412
Files processed0040408080120120160160200200240240280280320320Jun-26 19:00Jun-26 20:00Jun-26 21:00Jun-26 22:00Jun-26 23:00Jun-27 00:00Jun-27 01:00Files processedBin start timesNumber per binUK_RAL-PPDUS_UChicagoUK_SheffieldCZ_FZUUK_OxfordUK_LancasterUS_FNAL-FermiG…US_FNAL-FermiGridUK_ManchesterUK_BristolCERNFR_CCIN2P3UK_RAL-Tier1UK_QMULUK_DurhamUS_ColoradoUS_Wisconsin
Replicas per RSE1000477.6745949750212199.52075644509261000304.53458305592125289.98534778773706147310.1710953939277151.1173038184121569333.5431540451812134.2974659052208653348.564607153742127.9638984383315529359.15034774411356125.1098448735412925366.26470686089516123.8673128567594123372.6491883384167123.1939872544226214377.59236284168094122.953822010412142379.7324595186318122.92535584407554Replicas per RSEDUNE_US_FNAL_DISK_S…DUNE_US_FNAL_DISK_STAGE (42%)FNAL_DCACHE (42%)RAL_ECHO (6%)RAL-PP (2%)NIKHEF (2%)DUNE_UK_LANCASTER_C…DUNE_UK_LANCASTER_CEPH (1%)PRAGUE (1%)DUNE_ES_PIC (0%)QMUL (0%)SURFSARA (0%)

RSEs used

NameInputsOutputs
DUNE_US_FNAL_DISK_STAGE6710
RAL_ECHO1580
DUNE_ES_PIC1380
RAL-PP730
NIKHEF640
DUNE_UK_LANCASTER_CEPH340
PRAGUE290
QMUL180
SURFSARA20
None0963

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

SiteAllocatedOutputting
UK_Manchester120
NL_NIKHEF110
US_FNAL-FermiGrid73
US_Colorado70
US_UChicago60
UK_QMUL50
UK_RAL-PPD40
US_Wisconsin31
CERN10
UK_Sheffield11
UK_RAL-Tier110
CZ_FZU06
UK_Lancaster02
UK_Durham01

Jobscript

#!/bin/bash

# FCL file and DUNE software version/qualifier to be used
FCL_FILE=${FCL_FILE:-$INPUT_TAR_DIR_LOCAL/saraReco.fcl}
DUNE_VERSION=${DUNE_VERSION:-v10_08_00d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}

# Make sure that we're not beeing greedy with resources...
if [ -z ${JUSTIN_PROCESSORS} ]; then
 JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS}
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS}
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS}
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS}
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}

# setup the DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
source $INPUT_TAR_DIR_LOCAL/setup-grid
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
mrbslp

export FW_SEARCH_PATH=.:${INPUT_TAR_DIR_LOCAL}:$FW_SEARCH_PATH
export FHICL_FILE_PATH=.:${INPUT_TAR_DIR_LOCAL}:$FHICL_FILE_PATH

# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
 events_option="-n $NUM_EVENTS"
fi

# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`

if [ "$did_pfn_rse" = "" ] ; then
  echo "Nothing to process - exit jobscript"
  exit 0
fi

# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt

# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"

# Construct outFile from input $pfn 
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`

campaign="justIN.w${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"

# Here is where the LArSoft command is call it 
(
# Do the scary preload stuff in a subshell!
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so

lar -c $FCL_FILE $events_option "$pfn" > ${fname}_reco_${now}.log 2>&1
)

# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"

echo '=== Start last 100 lines of lar log file ==='
tail -100 ${fname}_reco_${now}.log
echo '=== End last 100 lines of lar log file ==='

mv Particles.root Particles_${fname}.root

if [ $larExit -eq 0 ] ; then
  # Success !
  echo "$pfn" > justin-processed-pfns.txt
  jobscriptExit=0
else
  # Oh :(
  jobscriptExit=1
fi

# Create compressed tar file with all log files 
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
exit $jobscriptExit
justIN time: 2025-08-14 11:45:22 UTC       justIN version: 01.03.02