21 July 2025: This instance at RAL is read-only. Please do not try submitting new workflows for now.

Workflow 7905, Stage 1

Priority	50
Processors	1
Wall seconds	80000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	4194304000 (4000 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Lancaster, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/higuera/07905/1	ana.root

Environment variables

Name	Value
INPUT_TAR_DIR_LOCAL	/cvmfs/fifeuser4.opensciencegrid.org/sw/dune/ac3164fcb1e76377d6d1ee7523a1957713af7671/

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
1000	0	428	0	0	572	0	0

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
576	0	0	0	0	62	0	12	31	468	3	0

RSEs used

Name	Inputs	Outputs
DUNE_UK_GLASGOW	325	0
PRAGUE	174	0
DUNE_UK_LANCASTER_CEPH	158	0
RAL_ECHO	124	0
RAL-PP	118	0
QMUL	88	0
DUNE_CERN_EOS	42	0
DUNE_UK_MANCHESTER_CEPH	1	0
None	0	62

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
ES_PIC	298	0
UK_RAL-Tier1	70	0
UK_QMUL	20	0
UK_Lancaster	20	0
CZ_FZU	10	0
UK_Manchester	10	20
UK_Durham	0	10

Jobscript

#!/bin/bash
#
FCL_FILE=/cvmfs/fifeuser4.opensciencegrid.org/sw/dune/ac3164fcb1e76377d6d1ee7523a1957713af7671/atmo_test/srcs/duneana/duneana/AtmoAnalysis/jobAtmoAnalysis.fcl
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune
echo $INPUT_TAR_DIR_LOCAL
#Setup recent lar software suite
setup dunesw \
   "${DUNE_VERSION:-v09_91_02d01}" \
   -q "${DUNE_QUALIFIER:-e26:prof}"
echo "printing env"
export PRODUCTS="${INPUT_TAR_DIR_LOCAL}/atmo_test/localProducts_larsoft_v09_91_02_e26_prof/:$PRODUCTS"
setup duneana v09_91_02d01 -q e26:prof

if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

echo $FCL_FILE

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
 events_option="-n $NUM_EVENTS"
fi

for nf in {1..10}; do  
    DID_PFN_RSE=$($JUSTIN_PATH/justin-get-file)

    # Check that any file was returned
    if [ "${DID_PFN_RSE}" == "" ]; then
        echo "Could not get file"
        # exit 0
        continue
    fi

    FILE=$(echo ${DID_PFN_RSE} | cut -f2 -d' ')
    DID=$(echo ${DID_PFN_RSE} | cut -f1 -d' ')
    
    echo ${DID} >> did.list
    echo ${FILE} >> file.list 
done
# First get an unprocessed file from this stage
#did_pfn_rse=`$JUSTIN_PATH/justin-get-file`

#if [ "$did_pfn_rse" = "" ] ; then
#  echo "Nothing to process - exit jobscript"
#  exit 0
#fi

# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
#echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt

# pfn is also needed when creating justin-processed-pfns.txt
#pfn=`echo $did_pfn_rse | cut -f2 -d' '`
#echo "Input PFN = $pfn"

# Construct outFile from input $pfn 
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
#Ffname=`echo $pfn | awk -F/ '{print $NF}'`
#fname=`echo $Ffname | awk -F. '{print $1}'`

#campaign="justIN.w${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"
echo "here1"
# Here is where the LArSoft command is call it 
(
# Do the scary preload stuff in a subshell!
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "$LD_PRELOAD"

echo "here2"
lar -c $FCL_FILE -S file.list >ana_log_$now.log 
mv atmo_ana_wreco2_lbl_model.root atmo_ana_${now}.root
)

# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"

if [ $larExit -eq 0 ] ; then
  # Success !
  cat file.list > justin-processed-pfns.txt
  jobscriptExit=0
else
  # Oh :(
  jobscriptExit=1
fi

# Create compressed tar file with all log files 
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
exit $jobscriptExit