Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)
File reset events, by site
Site
Allocated
Outputting
UK_Manchester
39
0
US_FNAL-FermiGrid
39
0
UK_RAL-PPD
28
0
CERN
8
0
FR_CCIN2P3
5
0
UK_QMUL
2
0
Jobscript
#!/bin/bash
:<<'EOF'
Use this jobscript to process files from the dataset fardet-hd:fardet-hd__hit-reconstructed__v09_91_04d00__reco1_supernova_dune10kt_1x2x6__prodmarley_nue_cc_flat_radiological_decay0_dune10kt_1x2x6_centralAPA__out1__v1_official
data and put the output in the $USER namespace (MetaCat) and saves the output in /scratch
Use this script by doing
source hd_1x2x6_centralAPA.sh
(use source fdhdcentral_test.sh first to test it locally - also a good idea to remove the folder created in /tmp afterwards).
This example uses a custom dune repository that is provided via a tar file.
I recommend sending the tar to cvmfs in advance, just to avoid any problem, with this command
INPUT_TAR_DIR_LOCAL=`justin-cvmfs-upload larsoft_v10_05_00.tar.gz`
The following optional environment variables can be set when creating the
workflow/stage: FCL_FILE, NUM_EVENTS, DUNE_VERSION, DUNE_QUALIFIER
EOF
# fcl file and DUNE software version/qualifier to be used
FCL_FILE=${FCL_FILE:-solar_ana_flash_radiological_decay0_dune10kt_1x2x6_centralAPA.fcl}
DUNE_VERSION=${DUNE_VERSION:-v10_05_00d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}
# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
events_option="-n $NUM_EVENTS"
fi
# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`
if [ "$did_pfn_rse" = "" ] ; then
echo "Nothing to process - exit jobscript"
exit 0
fi
# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt
# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"
# Setup DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
# export WORKDIR=${_CONDOR_JOB_IWD} # if we use the RCDS the our tarball will be placed in $INPUT_TAR_DIR_LOCAL.
# if [ ! -d "$WORKDIR" ]; then
# export WORKDIR=`echo .`setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
# fi
echo "Setting up larsoft"
echo ${INPUT_TAR_DIR_LOCAL}
source ${INPUT_TAR_DIR_LOCAL}/larsoft_v10_05_00/localProducts_larsoft_v10_05_00_e26_prof/setup_grid
# export FW_SEARCH_PATH=${INPUT_TAR_DIR_LOCAL}/larsoft_v10_05_00/:$FW_SEARCH_PATH
# export PRODUCTS="${INPUT_TAR_DIR_LOCAL}/larsoft_v10_05_00/localProducts_larsoft_v10_05_00_e26_prof/:$PRODUCTS"
# Then we can set up our local products
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
# setup larsoft "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
mrb uc
mrbsetenv
mrbslp
mrbslp
# Construct outFile from input $pfn
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`
outFile=fdhd_ana_${now}.root
outHistFile=fdhd_ana_${now}_hist.root
campaign="justIN.w${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"
# Here is where the LArSoft command is call it
(
# Do the scary preload stuff in a subshell!
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "$LD_PRELOAD"
lar -c $FCL_FILE $events_option -T $outHistFile "$pfn" > fdhd_ana_${now}.log 2>&1
)
echo ''
echo '=== Start last 1000 lines of lar log file ==='
tail -1000 fdhd_ana_${now}.log
echo '=== End last 100 lines of lar log file ==='
echo ''
# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"
if [ $larExit -eq 0 ] ; then
# Success !
echo "$pfn" > justin-processed-pfns.txt
jobscriptExit=0
else
# Oh :(
jobscriptExit=1
fi
# Create compressed tar file with all log files
#tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
exit $jobscriptExit
justIN time: 2025-05-22 23:00:36 UTC justIN version: 01.03.01
