Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)
File reset events, by site
Site
Allocated
Outputting
UK_Manchester
4
0
UK_RAL-PPD
4
0
US_FNAL-FermiGrid
1
0
Jobscript
#!/bin/bash
:<<'EOF'
To use this jobscript to process 5 files from the dataset fardet-hd__fd_mc_2023a_reco2__full-reconstructed__v09_81_00d02__standard_reco2_dune10kt_nu_1x2x6__prodgenie_nu_dune10kt_1x2x6__out1__validation
data and put the output in the $USER namespace (MetaCat) and saves the output in /scratch
Use this command to create the workflow:
justin simple-workflow \
--mql \
"files from fardet-hd:fardet-hd__fd_mc_2023a__hit-reconstructed__v09_78_01d01__standard_reco1_dune10kt_1x2x6__prodgenie_nu_dune10kt_1x2x6__out1__v1_official limit 5 ordered"\
--jobscript submit_ana.jobscript --rss-mb 4000 \
--scope higuera --output-pattern '*_myreco2_*.root:$FNALURL/$USERF'
The following optional environment variables can be set when creating the
workflow/stage: FCL_FILE, NUM_EVENTS, DUNE_VERSION, DUNE_QUALIFIER
EOF
# fcl file and DUNE software version/qualifier to be used
FCL_FILE=${FCL_FILE:-$INPUT_TAR_DIR_LOCAL/reco2_full_lowe_pandora.fcl}
DUNE_VERSION=${DUNE_VERSION:-v09_92_00d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}
FW_SEARCH_PATH=$INPUT_TAR_DIR_LOCAL:.:${INPUT_TAR_DIR_LOCAL}:$FW_SEARCH_PATH
FHICL_FILE_PATH=$INPUT_TAR_DIR_LOCAL:$FHICL_FILE_PATH:.
cp ${INPUT_TAR_DIR_LOCAL}/*.fcl .
cp ${INPUT_TAR_DIR_LOCAL}/*.xml .
# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
events_option="-n $NUM_EVENTS"
fi
# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`
if [ "$did_pfn_rse" = "" ] ; then
echo "Nothing to process - exit jobscript"
exit 0
fi
# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt
# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"
# Setup DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
source $INPUT_TAR_DIR_LOCAL/v09_92_00.prof/localProducts_larsoft_v09_92_00_e26_prof/setup
export PRODUCTS="${INPUT_TAR_DIR_LOCAL}/v09_92_00.prof/localProducts_larsoft_v09_92_00_e26_prof/:$PRODUCTS"
# Then we can set up our local products
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
mrbslp
# Construct outFile from input $pfn
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`
outFile=${fname}_myreco2_${now}.root
campaign="justIN.w${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"
# Here is where the LArSoft command is call it
(
# Do the scary preload stuff in a subshell!
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "$LD_PRELOAD"
lar -c $FCL_FILE $events_option -o $outFile "$pfn" > ${fname}_myreco2_${now}.log 2>&1
)
echo '=== Start last 100 lines of lar log file ==='
tail -100 ${fname}_myreco2_${now}.log
echo '=== End last 100 lines of lar log file ==='
# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"
if [ $larExit -eq 0 ] ; then
# Success !
echo "$pfn" > justin-processed-pfns.txt
jobscriptExit=0
else
# Oh :(
jobscriptExit=1
fi
# Create compressed tar file with all log files
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
exit $jobscriptExit
justIN time: 2025-05-22 14:13:01 UTC justIN version: 01.03.01
