Workflow 7081, Stage 1

Priority	50
Processors	1
Wall seconds	80000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	3144679424 (2999 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Lancaster, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	Rucio usertests:calcuttj_test_convert_unet-w7081s1p1	*.pt	604800	False

Environment variables

Name	Value
DOCOPY	1
NFILES	5
UNET_DIR	/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/b5765e0d70ac8df928f55219574a442063a5eb63

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
10	0	9	0	0	1	0	0

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
44	0	0	0	0	34	0	8	2	0	0	0

RSEs used

Name	Inputs	Outputs
DUNE_UK_MANCHESTER_CEPH	12	0
RAL_ECHO	6	0
RAL-PP	6	5
DUNE_US_FNAL_DISK_STAGE	4	0
DUNE_FR_CCIN2P3_DISK	1	0

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
UK_RAL-PPD	11	0
UK_Edinburgh	8	0
FR_CCIN2P3	5	0
US_Colorado	4	0

Jobscript

#!/bin/bash
#
if [ -z $UNET_DIR ]; then
        echo "fatal must provide UNET_DIR env var"
        exit 1
fi

source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup python v3_9_15
setup xrootd v5_5_5a -q e26:p3915:prof

if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

NFILES=${NFILES:-1}
files=()
nfiles=0
#if [ $NFILES -eq 1 ]; then
#  echo "Will use justin-get-file"
#  DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
#  if [ "${DID_PFN_RSE}" == "" ] ; then
#    echo "Could not get file"
#    exit 0
#  fi
#  export pfn=`echo ${DID_PFN_RSE} | cut -f2 -d' '`
#  export did=`echo ${DID_PFN_RSE} | cut -f1 -d' '`
#
#  if [ -z ${TESTFILE} ]; then
#    files+=($pfn)
#  else
#    files+=(${TESTFILE})
#  fi
#
if [ -n "${TESTFILE}" ]; then
  echo "Using testfile"
  files+=(${TESTFILE})
  nfiles=1
else
  nfiles=0
  for i in `seq 1 ${NFILES:-1}`; do
    echo $i
    DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`

    if [ "${DID_PFN_RSE}" == "" ] ; then
      echo "Could not get file -- exiting loop"
      break
    fi

    echo "did_pfn_rse: ${DID_PFN_RSE}"

    THISFILE=`echo ${DID_PFN_RSE} | cut -f2 -d' '`

    echo $THISFILE
    files+=(${THISFILE})
    nfiles=$(( nfiles + 1 ))
  done
fi

echo "Got $nfiles Files"
echo ${files[@]}

if [ $nfiles -eq 0 ]; then
  echo "Got no files. Exiting safely"
fi


echo "Justin specific env vars"
env | grep JUSTIN
now=$(date -u +"%Y%m%dT%H%M%SZ")
jobid=`echo "${JUSTIN_JOBSUB_ID:-1}" | cut -f1 -d'@' | sed -e "s/\./_/"`
stageid=${JUSTIN_STAGE_ID:-1}


if [ -z ${TORCHDIR} ]; then
  echo "installing torch"
  pip install --user torch h5py
  exitcode=$?
  if [ $exitcode -ne 0 ]; then
    echo "Error installing torch. Exiting with ${exitcode}"
    exit $exitcode
  fi
else
  echo "using venv"
  source ${TORCHDIR}/bin/activate
fi

if [ -z ${DOCOPY} ]; then 
  echo "Not copyign"
  input=${files[@]}
else
  for f in ${files[@]}; do
    echo "Copying $f"
    xrdcp $f .
  done
  input=`ls *h5`
fi 

echo "input ${input[@]}"

## Run convert on the output
for f in $input; do
  echo $f
  LD_PRELOAD=$XROOTD_LIB/libXrdPosixPreload.so python $UNET_DIR/convert_to_pt.py $f #$files #$pfn #extracted*h5
  exitcode=$?
  if [ $exitcode -ne 0 ]; then
    echo "Error converting to torch. Exiting with ${exitcode}"
    exit $exitcode
  fi
done

#echo "$pfn" > justin-processed-pfns.txt
for i in ${files[@]}; do
  echo "${i}" >> justin-processed-pfns.txt
done