Workflow 7027, Stage 1
| Priority | 50 |
| Processors | 1 |
| Wall seconds | 80000 |
| Image | /cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest |
| RSS bytes | 4194304000 (4000 MiB) |
| Max distance for inputs | 30.0 |
| Enabled input RSEs |
CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC |
| Enabled output RSEs |
CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC |
| Enabled sites |
BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Lancaster, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin |
| Scope | usertests |
| Events for this stage |
Output patterns
| | Destination | Pattern | Lifetime | For next stage | RSE expression |
|---|
| 1 | https://fndcadoor.fnal.gov:2880/dune/scratch/users/ichong/07027/1 | * | | | |
Environment variables
| Name | Value |
|---|
| CODE_TAR_DIR_LOCAL | /cvmfs/fifeuser4.opensciencegrid.org/sw/dune/c976ce192292f2f9835b2b96cb18eba74fad6274 |
| DUNE_QUALIFIER | e26:prof |
| DUNE_VERSION | v10_04_06d00 |
| FCL_FILE | /cvmfs/fifeuser1.opensciencegrid.org/sw/dune/cbc229121354346c08a6a4e532bc52cfe25d3a05/atm-training-extract.fcl |
| NUM_EVENTS | 20 |
| XML_MASTER | /cvmfs/fifeuser1.opensciencegrid.org/sw/dune/cbc229121354346c08a6a4e532bc52cfe25d3a05/PandoraSettings_Master_Training_CSV.xml |
| XML_NEUTRINO | /cvmfs/fifeuser1.opensciencegrid.org/sw/dune/cbc229121354346c08a6a4e532bc52cfe25d3a05/PandoraSettings_Neutrino_Training_CSV.xml |
File states
| Total files | Finding | Unallocated | Allocated | Outputting | Processed | Not found | Failed |
|---|
|
| 50 | 0 | 44 | 0 | 0 | 1 | 0 | 5 |
Job states
| Total | Submitted | Started | Processing | Outputting | Finished | Notused | Aborted | Stalled | Jobscript error | Outputting failed | None processed |
|---|
| 133 | 0 | 0 | 0 | 0 | 1 | 0 | 92 | 5 | 35 | 0 | 0 |
RSEs used
| Name | Inputs | Outputs |
|---|
| PRAGUE | 42 | 0 |
| QMUL | 26 | 0 |
| NIKHEF | 17 | 0 |
| SURFSARA | 16 | 0 |
| RAL-PP | 5 | 0 |
| DUNE_ES_PIC | 5 | 0 |
| RAL_ECHO | 3 | 0 |
| DUNE_FR_CCIN2P3_DISK | 3 | 0 |
| None | 0 | 15 |
Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)
File reset events, by site
| Site | Allocated | Outputting |
|---|
| UK_Manchester | 23 | 0 |
| ES_PIC | 23 | 0 |
| UK_RAL-PPD | 11 | 0 |
| UK_Sheffield | 8 | 0 |
| UK_Bristol | 6 | 0 |
| UK_Oxford | 5 | 0 |
| UK_Brunel | 3 | 0 |
| CERN | 1 | 0 |
Jobscript
#!/bin/bash
:<<'EOF'
This jobscript generates CaloHitList-based graph data
from input reco2 ROOT files using your custom LArSoft setup.
Required environment variables:
- FCL_FILE
- CODE_TAR_DIR_LOCAL
- DUNE_VERSION
- DUNE_QUALIFIER
- XML_MASTER
- XML_NEUTRINO
- NUM_EVENTS (optional)
EOF
# === Setup FCL and version info ===
FCL_FILE=${FCL_FILE:-atm-training-extract.fcl}
DUNE_VERSION=${DUNE_VERSION:-v10_04_06d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}
# === Number of events option ===
if [ -n "$NUM_EVENTS" ]; then
events_option="-n $NUM_EVENTS"
fi
# === Get a file from justIN ===
did_pfn_rse=$($JUSTIN_PATH/justin-get-file)
if [ -z "$did_pfn_rse" ]; then
echo "No file assigned. Exiting jobscript."
exit 0
fi
# === Track input DID for MetaCat ===
echo "$did_pfn_rse" | cut -f1 -d' ' >> all-input-dids.txt
# === Parse PFN from DID ===
pfn=$(echo "$did_pfn_rse" | cut -d' ' -f2)
echo "Input PFN = $pfn"
# === Setup DUNE software ===
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
# === Setup custom code ===
if [ -n "$CODE_TAR_DIR_LOCAL" ]; then
echo "Using local products from $CODE_TAR_DIR_LOCAL"
source $CODE_TAR_DIR_LOCAL/larsoft_graph_V1_2025/localProducts_larsoft_v10_04_06_e26_prof/setup
mrbslp
fi
# === Output file naming ===
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
fname=$(basename "$pfn" .root)
outFile="${fname}_graph_${now}.root"
logFile="${fname}_graph_${now}.log"
# === Set FW search path ===
XML_DIR_MASTER=$(dirname "$XML_MASTER")
XML_DIR_NEUTRINO=$(dirname "$XML_NEUTRINO")
export FW_SEARCH_PATH="$XML_DIR_MASTER:$XML_DIR_NEUTRINO:$FW_SEARCH_PATH"
# === Run lar ===
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "Running LArSoft with FCL: $FCL_FILE"
lar -c "$FCL_FILE" $events_option -o "$outFile" "$pfn" > "$logFile" 2>&1
larExit=$?
echo '=== Start last 100 lines of lar log file ==='
tail -100 "$logFile"
echo '=== End last 100 lines of lar log file ==='
# === Mark processed ===
if [ $larExit -eq 0 ]; then
echo "$pfn" > justin-processed-pfns.txt
jobscriptExit=0
else
jobscriptExit=1
fi
# === Package logs ===
tar zcf "${JUSTIN_JOBSUB_ID//[@]/_}.logs.tgz" *.log
# === Display output summary ===
echo "=== Generated output files ==="
ls -1 *.* 2>/dev/null | grep -v 'all-input-dids.txt' || echo "No output files found."
# === Full log for dashboard ===
echo "=== Full log (for dashboard display) ==="
cat "$logFile" > jobscript_full.log
cat jobscript_full.log
exit $jobscriptExit
