Workflow 6972, Stage 1
| Priority | 50 |
| Processors | 1 |
| Wall seconds | 80000 |
| Image | /cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest |
| RSS bytes | 4194304000 (4000 MiB) |
| Max distance for inputs | 30.0 |
| Enabled input RSEs |
CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC |
| Enabled output RSEs |
CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC |
| Enabled sites |
BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Lancaster, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin |
| Scope | usertests |
| Events for this stage |
Output patterns
| | Destination | Pattern | Lifetime | For next stage | RSE expression |
|---|
| 1 | https://fndcadoor.fnal.gov:2880/dune/scratch/users/ichong/06972/1 | * | | | |
Environment variables
| Name | Value |
|---|
| CODE_TAR_DIR_LOCAL | /cvmfs/fifeuser4.opensciencegrid.org/sw/dune/c976ce192292f2f9835b2b96cb18eba74fad6274 |
| DUNE_QUALIFIER | e26:prof |
| DUNE_VERSION | v10_04_06d00 |
| FCL_FILE | /cvmfs/fifeuser3.opensciencegrid.org/sw/dune/5a243cdf1bebd2a8c260c4fcd69b278dcac8660b/atm-training-extract.fcl |
| NUM_EVENTS | 10 |
| XML_MASTER | /cvmfs/fifeuser3.opensciencegrid.org/sw/dune/5a243cdf1bebd2a8c260c4fcd69b278dcac8660b/PandoraSettings_Master_Training_CSV.xml |
| XML_NEUTRINO | /cvmfs/fifeuser3.opensciencegrid.org/sw/dune/5a243cdf1bebd2a8c260c4fcd69b278dcac8660b/PandoraSettings_Neutrino_Training_CSV.xml |
File states
| Total files | Finding | Unallocated | Allocated | Outputting | Processed | Not found | Failed |
|---|
|
| 50 | 0 | 45 | 0 | 0 | 1 | 0 | 4 |
Job states
| Total | Submitted | Started | Processing | Outputting | Finished | Notused | Aborted | Stalled | Jobscript error | Outputting failed | None processed |
|---|
| 237 | 0 | 0 | 0 | 0 | 1 | 0 | 107 | 108 | 21 | 0 | 0 |
RSEs used
| Name | Inputs | Outputs |
|---|
| PRAGUE | 47 | 0 |
| NIKHEF | 18 | 0 |
| QMUL | 17 | 0 |
| SURFSARA | 13 | 0 |
| RAL-PP | 10 | 0 |
| RAL_ECHO | 9 | 0 |
| DUNE_ES_PIC | 8 | 0 |
| DUNE_FR_CCIN2P3_DISK | 6 | 0 |
| None | 0 | 14 |
Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)
File reset events, by site
| Site | Allocated | Outputting |
|---|
| FR_CCIN2P3 | 23 | 0 |
| ES_PIC | 21 | 0 |
| UK_RAL-PPD | 20 | 0 |
| CERN | 17 | 0 |
| UK_RAL-Tier1 | 14 | 0 |
| UK_Sheffield | 6 | 0 |
| UK_Brunel | 3 | 0 |
Jobscript
#!/bin/bash
:<<'EOF'
This jobscript is designed to generate CaloHitList-based graph data
from input reco2 ROOT files using your custom LArSoft setup.
Environment variables used:
- FCL_FILE
- CODE_TAR_DIR_LOCAL
- DUNE_VERSION
- DUNE_QUALIFIER
- XML_MASTER
- XML_NEUTRINO
- NUM_EVENTS (optional)
EOF
# === Setup FCL and version info ===
FCL_FILE=${FCL_FILE:-atm-training-extract.fcl}
DUNE_VERSION=${DUNE_VERSION:-v10_04_06d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}
HAS_ART_OUTPUT=false
# === Number of events ===
if [ -n "$NUM_EVENTS" ]; then
events_option="-n $NUM_EVENTS"
fi
# === Get a file from justIN ===
did_pfn_rse=$($JUSTIN_PATH/justin-get-file)
if [ -z "$did_pfn_rse" ]; then
echo "No file assigned. Exiting jobscript."
exit 0
fi
# === Parse PFN from did_pfn_rse ===
pfn=$(echo "$did_pfn_rse" | cut -d' ' -f2)
echo "Input PFN = $pfn"
# === DUNE software setup ===
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
export PRODUCTS=/cvmfs/dune.opensciencegrid.org/products/dune/testproducts:${PRODUCTS}
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
# === Custom local products ===
if [ -n "$CODE_TAR_DIR_LOCAL" ]; then
echo "Loading local LArSoft from $CODE_TAR_DIR_LOCAL"
source ${CODE_TAR_DIR_LOCAL}/*/localProducts*/setup
mrbslp
fi
# === Output file naming ===
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
fname=$(basename "$pfn" .root)
# === Set FW search path to include both XML directories ===
XML_DIR_MASTER=$(dirname "$XML_MASTER")
XML_DIR_NEUTRINO=$(dirname "$XML_NEUTRINO")
export FW_SEARCH_PATH="$XML_DIR_MASTER:$XML_DIR_NEUTRINO:$FW_SEARCH_PATH"
# === Run lar ===
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "Running LArSoft with FCL: $FCL_FILE"
lar -c "$FCL_FILE" $events_option "$pfn" > ${fname}_graph_${now}.log 2>&1
larExit=$?
# === Mark processed if successful ===
if [ $larExit -eq 0 ]; then
echo "$pfn" > justin-processed-pfns.txt
jobscriptExit=0
else
jobscriptExit=1
fi
# === Package logs ===
tar zcf "${JUSTIN_JOBSUB_ID}.logs.tgz" *.log
# === Rename .data files ===
data_files=$(ls -1 *.data 2>/dev/null)
if [ -n "$data_files" ]; then
for f in $data_files; do
base=$(basename "$f" .data)
new_name="${base}__${fname}__${JUSTIN_JOBSUB_ID}.data"
mv "$f" "$new_name"
done
else
echo "No .data files to rename."
fi
# === Show generated .data files ===
echo "=== Generated .data files ==="
data_files=$(ls -1 *.data 2>/dev/null)
if [ -n "$data_files" ]; then
echo "$data_files"
else
echo "No .data files found."
fi
# === Export log content for Justin dashboard ===
echo "=== Last 100 lines of log (for dashboard display) ==="
tail -n 100 ${fname}_graph_${now}.log > jobscript.log
cat jobscript.log
ls -lh *.data *.log || true
exit $jobscriptExit
