Workflow 6593, Stage 1

Priority	50
Processors	1
Wall seconds	80000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	4194304000 (4000 MiB)
Max distance for inputs	100.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	Rucio usertests:output-test-w6593s1p1	_protodunehd_.root	172800	False

Environment variables

Name	Value
DUNESW_VERSION	v10_05_00d00
JSONFILE	pdhd_wnp04_base_meta.json
MCJob	1
NEVENTS	1
pipyaml	1
UTIL_TAR	/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/555c05082aff8a1abf572e510c49d2bb42a87fb2
YAMLFILE	pdhd_wnp04_spsneutrino_mc.yaml

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
5	0	0	0	0	0	0	5

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
60	0	0	0	0	29	0	6	1	23	1	0

RSEs used

Name	Inputs	Outputs
MONTECARLO	30	0

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
UK_Manchester	3	1
ES_PIC	1	0
US_FNAL-FermiGrid	1	0
BR_CBPF	1	0

Jobscript

#!/bin/bash
#

#These must be defined
if [ -z $UTIL_TAR ]; then
  echo "Fatal must provide UTIL_TAR env var"
  exit 1
fi
export PYTHONPATH=$UTIL_TAR:$PYTHONPATH
# FHICL files in tarball can be found by appending tarball to fhicl path
export FHICL_FILE_PATH=$UTIL_TAR:$FHICL_FILE_PATH
# May want to append util_tar to FW_SEARCH_PATH in the future (for data processing)
#export FW_SEARCH_PATH=$UTIL_TAR:$FW_SEARCH_PATH

source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune

if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

echo "Justin specific env vars"
env | grep JUSTIN
now=$(date -u +"%Y%m%dT%H%M%SZ")
jobid=`echo "${JUSTIN_JOBSUB_ID:-1}" | cut -f1 -d'@' | sed -e "s/\./_/"`
stageid=${JUSTIN_STAGE_ID:-1}
a=1
if [ -n "$DUNESW_TAR" ]; then
  stat ${DUNESW_TAR}
  if [ $? -ne 0 ]; then
    echo "Failed to stat $DUNESW_TAR. Exiting safely"
    exit 0
  fi
 
  export PRODUCTS=$DUNESW_TAR:$PRODUCTS 
  echo "Set dunesw to $DUNESW_TAR"
fi

if [ -n "$WIRECELL_TAR" ]; then
  stat ${WIRECELL_TAR}
  if [ $? -ne 0 ]; then
    echo "Failed to stat $WIRECELL_TAR. Exiting safely"
    exit 0
  fi
 
  export PRODUCTS=$WIRECELL_TAR:$PRODUCTS 
  echo "Set wirecell to $WIRECELL_TAR"
fi

#Setup recent lar software suite
DUNESW_VERSION=${DUNESW_VERSION:-v10_05_00d00}
setup dunesw \
  "${DUNESW_VERSION}" \
  -q "${DUNE_QUALIFIER:-e26:prof}"
 
setup_exit=$?
if [ $? -ne 0 ]; then
  echo "Failed to setup dunesw $DUNESW_VERSION $DUNE_QUALIFIER"
  exit $setup_exit
fi
 
echo "DUNESW loc:"
ups active | grep dunesw

echo "WIRECELL loc:"
ups active | grep wirecell
 
 
echo "printing env"
env
echo "DUNE specific env vars"
env | grep DUNE

# User can specify to pip install pyyaml
if [ -n "$pipyaml" ]; then
  echo "Installing yaml"
  pip install --user pyyaml
  echo "Done"
# elif [ -n "${YAML_TAR}" ]; then
#   echo "Using venv at ${YAML_TAR}"
#   source ${YAML_TAR}/yaml_venv/bin/activate
fi

echo "Will use justin-get-file"
DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
if [ "${DID_PFN_RSE}" == "" ] ; then
  echo "Could not get file"
  exit 0
fi
pfn=`echo ${DID_PFN_RSE} | cut -f2 -d' '`
did=`echo ${DID_PFN_RSE} | cut -f1 -d' '`
 
input_filename=`echo $did | cut -f2 -d':'`
echo "input file: $input_filename"

echo "jobsub_id: ${JUSTIN_JOBSUB_ID:-1}"
 
#Get run/subrun from parent if using input -- else from justin job ID/process"
if [ -z "$MCJob" ]; then
  echo "Getting run subrun from $did"
  run_subrun=`python -m beam_job_utils get_run_subrun -i $did`
  get_run_ret=$?
  if [ $get_run_ret -ne 0 ]; then
    echo "error in get_run_subrun"
  fi
 
  echo $run_subrun
  run=`echo $run_subrun | cut -f1 -d' '`
  subrun=`echo $run_subrun | cut -f2 -d' '`
else
  run=`echo $jobid | cut -f1 -d'_'`  ##TODO -- check order here
  subrun=`echo $jobid | cut -f2 -d'_'`
fi
nevents=${NEVENTS:--1} #Set from env override or -1 
NSKIP=${NSKIP:-0} 
echo "nevents: $nevents"
 
overrides="core.data_tier=full-reconstructed \
  core.application.version=${DUNESW_VERSION} \
  core.application.name=reco \
  core.application.family=dunesw \
  core.application=dunesw.reco \
"

#User specifies if they'd like to use an input file or not 
if [ -n "$MCJob" ]; then
  inputflag=""
else
  inputflag="-i $pfn --parent $did"
fi

echo "input flag: $inputflag"

# TODO -- metadata file configurable
python -m beam_job_utils run_job \
      --json ${UTIL_TAR}/${JSONFILE:-pdhd_base_meta.json} \
      --overrides ${overrides} \
      --run $run \
      --subrun $subrun \
      --yaml ${UTIL_TAR}/${YAMLFILE:-pdhd_spsneutrino_mc.yaml} \
      --nevents $nevents \
      $inputflag

exitcode=$?
if [ $exitcode -ne 0 ]; then
  echo "Error running. Exiting with ${exitcode}"
  exit $exitcode
fi

echo "$pfn" > justin-processed-pfns.txt