justIN           Dashboard       Workflows       Jobs       AWT       Sites       Storages       Docs       Login

21 July 2025: This instance at RAL is read-only. Please do not try submitting new workflows for now.

Workflow 6202, Stage 1

Priority50
Processors1
Wall seconds80000
Image/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes6815744000 (6500 MiB)
Max distance for inputs100.0
Enabled input RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scopeusertests
Events for this stage

Output patterns

 DestinationPatternLifetimeFor next stageRSE expression
1https://fndcadoor.fnal.gov:2880/dune/scratch/users/ykermaid/06202/1prod_*_g4_stage2.*
2https://fndcadoor.fnal.gov:2880/dune/scratch/users/ykermaid/06202/1prod_*_reco*

Environment variables

NameValue
DUNESW_TAR/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/e8815ac39dca94020ce5fc558c111086b5fd6ed5
JSONFILEpdhd_photon_208Tl_base_meta.json
MCJob1
NEVENTS10
pipyaml1
UTIL_TAR/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/bb4f4e03fedc137e89a3dba2be3e44a701ffb096
YAMLFILEpdhd_207Bi_ion_nest_gen.yaml

File states

Total filesFindingUnallocatedAllocatedOutputtingProcessedNot foundFailed
10000000100000

Job states

TotalSubmittedStartedProcessingOutputtingFinishedNotusedAbortedStalledJobscript errorOutputting failedNone processed
287500001383085986039382
Files processed00100100200200300300400400500500600600700700Apr-09 11:00Apr-09 12:00Apr-09 13:00Apr-09 14:00Apr-09 15:00Apr-09 16:00Apr-09 17:00Apr-09 18:00Apr-09 19:00Apr-09 20:00Apr-09 21:00Apr-09 22:00Files processedBin start timesNumber per binUK_BristolUK_RAL-PPDCERNFR_CCIN2P3US_UChicagoUS_WisconsinUK_RAL-Tier1US_FNAL-T1US_FNAL-FermiG…US_FNAL-FermiGridUK_QMULUS_ColoradoUS_PuertoRicoES_PICUK_ImperialUK_SheffieldUK_LiverpoolUK_OxfordUK_EdinburghUK_DurhamCA_SFUUK_ManchesterUK_Glasgow

RSEs used

NameInputsOutputs
MONTECARLO12910
None09000

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

SiteAllocatedOutputting
UK_QMUL2539
UK_RAL-Tier11535
UK_Manchester1445
UK_Imperial112
UK_Liverpool82
US_Colorado74
US_UChicago76
FR_CCIN2P338
CERN317
ES_PIC25
UK_RAL-PPD28
UK_Edinburgh11
US_FNAL-T110
US_NotreDame10
UK_Glasgow13
UK_Durham10
US_FNAL-FermiGrid05
UK_Bristol04
US_Wisconsin03
UK_Oxford01
UK_Sheffield01

Jobscript

#!/bin/bash
#

#These must be defined
#if [ -z $FCL_FILE ]; then
#  echo "Fatal Must provide FCL_FILE env var"
#  exit 1
#fi

if [ -z $UTIL_TAR ]; then
  echo "Fatal must provide UTIL_TAR env var"
  exit 1
fi
export PYTHONPATH=$UTIL_TAR:$PYTHONPATH

source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune

if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

echo "Justin specific env vars"
env | grep JUSTIN
now=$(date -u +"%Y%m%dT%H%M%SZ")
jobid=`echo "${JUSTIN_JOBSUB_ID:-1}" | cut -f1 -d'@' | sed -e "s/\./_/"`
stageid=${JUSTIN_STAGE_ID:-1}
a=1
 if [ -n "$DUNESW_TAR" ]; then
   stat ${DUNESW_TAR}
   if [ $? -ne 0 ]; then
     echo "Failed to stat $DUNESW_TAR. Exiting safely"
     exit 0
   fi
 
   export PRODUCTS=$DUNESW_TAR:$PRODUCTS 
   echo "Set dunesw to $DUNESW_TAR"
 fi

 if [ -n "$WIRECELL_TAR" ]; then
   stat ${WIRECELL_TAR}
   if [ $? -ne 0 ]; then
     echo "Failed to stat $WIRECELL_TAR. Exiting safely"
     exit 0
   fi
 
   export PRODUCTS=$WIRECELL_TAR:$PRODUCTS 
   echo "Set wirecell to $WIRECELL_TAR"
 fi

 #Setup recent lar software suite
 DUNESW_VERSION=${DUNESW_VERSION:-v10_04_07d00}
 setup dunesw \
    "${DUNESW_VERSION}" \
    -q "${DUNE_QUALIFIER:-e26:prof}"
 
 setup_exit=$?
 if [ $? -ne 0 ]; then
   echo "Failed to setup dunesw $DUNESW_VERSION $DUNE_QUALIFIER"
   exit $setup_exit
 fi

 echo "DUNESW loc:"
 ups active | grep dunesw

 echo "WIRECELL loc:"
 ups active | grep wirecell
 
export FHICL_FILE_PATH=${DUNESW_TAR}:${FHICL_FILE_PATH}
 
 
 echo "printing env"
 env
 echo "DUNE specific env vars"
 env | grep DUNE

# User can specify to pip install pyyaml
if [ -n "$pipyaml" ]; then
  echo "Installing yaml"
  pip install --user pyyaml
  echo "Done"
# elif [ -n "${YAML_TAR}" ]; then
#   echo "Using venv at ${YAML_TAR}"
#   source ${YAML_TAR}/yaml_venv/bin/activate
fi


 echo "Will use justin-get-file"
 DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
 if [ "${DID_PFN_RSE}" == "" ] ; then
   echo "Could not get file"
   exit 0
 fi
 pfn=`echo ${DID_PFN_RSE} | cut -f2 -d' '`
 did=`echo ${DID_PFN_RSE} | cut -f1 -d' '`
 
 input_filename=`echo $did | cut -f2 -d':'`
 echo "input file: $input_filename"

 echo "jobsub_id: ${JUSTIN_JOBSUB_ID:-1}"
 
 #Get run/subrun from parent if using input -- else from justin job ID/process"
 echo "MCJob: $MCJob"
 if [ -z "$MCJob" ]; then
   echo "Getting run subrun from $did"
   run_subrun=`python -m beam_job_utils get_run_subrun -i $did`
   get_run_ret=$?
   if [ $get_run_ret -ne 0 ]; then
     echo "error in get_run_subrun"
   fi
 
   echo $run_subrun
   run=`echo $run_subrun | cut -f1 -d' '`
   subrun=`echo $run_subrun | cut -f2 -d' '`
 else
   run=`echo $jobid | cut -f1 -d'_'`  ##TODO -- check order here
   subrun=`echo $jobid | cut -f2 -d'_'`
 fi
 nevents=${NEVENTS:--1} #Set from env override or -1 
 NSKIP=${NSKIP:-0} 
 echo "nevents: $nevents"
 
 overrides="core.data_tier=full-reconstructed \
  core.application.version=${DUNESW_VERSION} \
  core.application.name=reco \
  core.application.family=dunesw \
  core.application=dunesw.reco \
 "

#User specifies if they'd like to use an input file or not 
if [ -n "$MCJob" ]; then
  inputflag=""
else
  inputflag="-i $pfn --parent $did"
fi

echo "input flag: $inputflag"

# TODO -- metadata file configurable
python -m beam_job_utils run_job \
      --json ${UTIL_TAR}/${JSONFILE} \
      --overrides ${overrides} \
      --run $run \
      --subrun $subrun \
      --yaml ${UTIL_TAR}/${YAMLFILE} \
      --nevents $nevents \
      --event 0 \
      $inputflag

exitcode=$?
if [ $exitcode -ne 0 ]; then
  echo "Error running. Exiting with ${exitcode}"
  exit $exitcode
fi

echo "$pfn" > justin-processed-pfns.txt
justIN time: 2025-08-14 20:57:06 UTC       justIN version: 01.03.02