Workflow 6145, Stage 1

Priority	50
Processors	1
Wall seconds	80000
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	2096103424 (1999 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/calcuttj/beamevent/040725/pdhd_runs_1_gain78_period3/06145/1	*.h5

Environment variables

Name	Value
DUNE_VERSION	v10_04_05d00
FCL_FILE	run_pdhd_trigger_timing.fcl
INPUT_DIR	/cvmfs/fifeuser4.opensciencegrid.org/sw/dune/d5f4ec0a3e82cd28de716fb2c92390a8a0dc7a8b
NEVENTS	-1

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
10000	5500	13	0	0	4487	0	0

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
5861	0	0	0	0	5391	0	26	268	0	168	8

RSEs used

Name	Inputs	Outputs
DUNE_CERN_EOS	4690	0
None	0	4487

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
UK_Manchester	3	19
UK_Sheffield	3	5
UK_Glasgow	3	8
UK_RAL-Tier1	1	42
UK_QMUL	0	30
CERN	0	27
UK_Imperial	0	15
ES_PIC	0	11
ES_CIEMAT	0	9
UK_Oxford	0	8
FR_CCIN2P3	0	6
UK_RAL-PPD	0	5
CH_UNIBE-LHEP	0	4
UK_Bristol	0	2
UK_Liverpool	0	1
UK_Edinburgh	0	1

Jobscript

#!/bin/bash
#

#These must be defined
if [ -z $FCL_FILE ]; then
  echo "Fatal Must provide FCL_FILE env var"
  exit 1
fi

if [ -z $INPUT_DIR ]; then
  echo "Fatal Must provide INPUT_DIR env var"
  exit 1
fi

stat ${INPUT_DIR}
if [ $? -ne 0 ]; then
  echo "Failed to $INPUT_DIR. Exiting safely"
  exit 0
fi



source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune

if [ -n "$PRODUCTS_TAR" ]; then
  stat ${PRODUCTS_TAR}
  if [ $? -ne 0 ]; then
    echo "Failed to stat $PRODUCTS_TAR. Exiting safely"
    exit 0
  fi

  export PRODUCTS=$PRODUCTS_TAR:$PRODUCTS 
  echo "Set protoduneana to $PRODUCTS_TAR"
fi


#Setup recent lar software suite
DUNE_VERSION=${DUNE_VERSION:-v10_01_01d00}
setup dunesw \
   "${DUNE_VERSION}" \
   -q "${DUNE_QUALIFIER:-e26:prof}"

setup_exit=$?
if [ $? -ne 0 ]; then
  echo "Failed to setup dunesw $DUNE_VERSION $DUNE_QUALIFIER"
  exit $setup_exit
fi


echo "DUNESW loc:"
ups active | grep dunesw

if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

pip install --user h5py
pipexit=$?
if [ $pipexit -ne 0 ]; then
  echo "Failed to install h5py"
  exit $pipexit
fi


export PYTHONPATH=$INPUT_DIR/gallery/python:$PYTHONPATH

echo "printing env"
env

echo "Justin specific env vars"
env | grep JUSTIN

echo "Will use justin-get-file"
#


echo "Will use justin-get-file"
DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
if [ "${DID_PFN_RSE}" == "" ] ; then
  echo "Could not get file"
  exit 0
fi
pfn=`echo ${DID_PFN_RSE} | cut -f2 -d' '`
did=`echo ${DID_PFN_RSE} | cut -f1 -d' '`

now=$(date -u +"%Y%m%dT%H%M%SZ")

##TODO -- edit this
#jobid=`echo "${JUSTIN_JOBSUB_ID:-1}" | awk -F '.' '{print $1}'`
jobid=`echo "${JUSTIN_JOBSUB_ID:-1}" | cut -f1 -d'@' | sed -e "s/\./_/"`
PREFIX=${PREFIX:-"decoded"}
OUTFILE="${PREFIX}_${jobid}_${JUSTIN_STAGE_ID}_${JUSTIN_WORKFLOW_ID}_${now}.root"


nevents=${NEVENTS:--1}

echo "Running lar on $pfn"
touch ana.log
starttime=`date +"%s"`.0
LD_PRELOAD=$XROOTD_LIB/libXrdPosixPreload.so lar \
    -c ${FCL_FILE} \
    -n ${nevents} \
    -o ${OUTFILE} \
    $pfn  >ana.log 2>&1
larExit=$?
endtime=`date +"%s"`.0

if [ $larExit -ne 0 ]; then
  echo "Error in lar"
  cat ana.log
  exit $larExit
fi

python -m trigger_info -i $OUTFILE
trig_exit=$?
if [ $trig_exit -ne 0 ]; then
  echo "Error in trigger_info"
  exit $trig_exit
fi
echo "Ran successfully"

echo "formed"
echo $pfn > justin-processed-pfns.txt