20th March: justIN upgraded to 01.03 - please report any problems in #computing-operations or #user_grid_usage on Slack
Workflow 5779, Stage 1
| Priority | 50 |
| Processors | 1 |
| Wall seconds | 28800 |
| Image | /cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest |
| RSS bytes | 4194304000 (4000 MiB) |
| Max distance for inputs | 100.0 |
| Enabled input RSEs |
CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC |
| Enabled output RSEs |
CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC |
| Enabled sites |
BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Glasgow, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin |
| Scope | usertests |
| Events for this stage |
Output patterns
| | Destination | Pattern | Lifetime | For next stage | RSE expression |
|---|
| 1 | https://fndcadoor.fnal.gov:2880/dune/scratch/users/dbrailsf/fdhd_nuts_cc/05779/1 | fdhd_reco2*.root | | | |
Environment variables
| Name | Value |
|---|
| INPUT_TAR_DIR_LOCAL | /cvmfs/fifeuser2.opensciencegrid.org/sw/dune/b7da564f47aaa4d1e0d89a55049d07acdda62619 |
| NUM_EVENTS | 10 |
File states
| Total files | Finding | Unallocated | Allocated | Outputting | Processed | Not found | Failed |
|---|
|
| 1000 | 0 | 502 | 0 | 0 | 418 | 0 | 80 |
Job states
| Total | Submitted | Started | Processing | Outputting | Finished | Notused | Aborted | Stalled | Jobscript error | Outputting failed | None processed |
|---|
| 1507 | 0 | 0 | 0 | 0 | 418 | 0 | 0 | 0 | 1089 | 0 | 0 |
RSEs used
| Name | Inputs | Outputs |
|---|
| MONTECARLO | 1507 | 0 |
| None | 0 | 418 |
Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)
Jobscript
#!/bin/bash
# fcl file and DUNE software version/qualifier to be used
#FCL_FILE=prodmarley_nue_cc_flat_radiological_decay0_dune10kt_1x2x6_nuts.fcl
FCL_FILE=prodmarley_nue_cc_gkvm_radiological_decay0_dune10kt_1x2x6_nuts.fcl
DUNE_VERSION=${DUNE_VERSION:-v10_04_05d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}
export FW_SEARCH_PATH=$FW_SEARCH_PATH:$INPUT_TAR_DIR_LOCAL
export FHICL_FILE_PATH=.:$FHICL_FILE_PATH
echo $FW_SEARCH_PATH
#cp $INPUT_TAR_DIR_LOCAL/*.fcl .
#cp $INPUT_TAR_DIR_LOCAL/*.xml .
#cp $INPUT_TAR_DIR_LOCAL/setup-grid .
#cp -r $INPUT_TAR_DIR_LOCAL/localProducts* .
# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
events_option="-n $NUM_EVENTS"
fi
# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`
if [ "$did_pfn_rse" = "" ] ; then
echo "Nothing to process - exit jobscript"
exit 0
fi
# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt
# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"
# Setup DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
# the xroot lib for streaming non-root files is in testproducts,
# so add it to the start of the path
export PRODUCTS=/cvmfs/dune.opensciencegrid.org/products/dune/testproducts:${PRODUCTS}
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}
source $INPUT_TAR_DIR_LOCAL/setup-grid
mrbslp
echo $DUNESW_DIR
# Construct outFile from input $pfn
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`
campaign="justIN.r${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"
(
# Do the scary preload stuff in a subshell!
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "$LD_PRELOAD"
lar -c $FCL_FILE $events_option -o fdhd_gen.root > ${fname}_fd_${now}.log 2>&1 \
&& lar -c supernova_g4_dune10kt_1x2x6_nuts.fcl -n -1 -s fdhd_gen.root -o fdhd_g4.root > ${fname}_fdhd_g4_${now}.log 2>&1 \
&& lar -c detsim_1dsimulation_dune10kt_1x2x6_nuts.fcl -n -1 -s fdhd_g4.root -o fdhd_detsim.root > ${fname}_fdhd_detsim_${now}.log 2>&1 \
&& lar -c reco1_1dsignalprocessing_dune10kt_1x2x6_nuts.fcl -n -1 -s fdhd_detsim.root -o fdhd_reco1.root > ${fname}_fdhd_reco1_${now}.log 2>&1 \
&& lar -c reco2_1dsignalprocessing_dune10kt_1x2x6_nuts.fcl -n -1 -s fdhd_reco1.root -o fdhd_reco2_${fname}.root > ${fname}_fdhd_reco2_${now}.log 2>&1
)
# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"
echo "$pfn" > justin-processed-pfns.txt
#mv pdhd_gen.root pdhd_gen_${fname}.root
#mv pdhd_g4.root pdhd_g4_${fname}.root
#mv pdhd_detsim.root pdhd_detsim_${fname}.root
#mv pdhd_reco.root pdhd_reco_${fname}.root
#mv Pandora_Events.pndr Pandora_Events_${fname}.pndr
mv hits.root hits_${fname}.root
mv hits3D.root hits3D_${fname}.root
mv mc.root mc_${fname}.root
mv events.root events_${fname}.root
ls -lRS
# Create compressed tar file with all log files
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
exit $larExit
