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Workflow 4958, Stage 1

Priority50
Processors1
Wall seconds26000
Image/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes6815744000 (6500 MiB)
Max distance for inputs30.0
Enabled input RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_Wisconsin
Scopehd-protodune
Events for this stage

Output patterns

 DestinationPatternLifetimeFor next stageRSE expression
1Rucio hd-protodune:calcuttj_p05gev_generic_0_200_012725_0-w4958s1p1*reco.root7776000False

Environment variables

NameValue
DUNESW_VERSIONv10_03_01d01
NEVENTS200
NSKIP0
pipyaml1
UTIL_TAR/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/f576c22954ba508e9b57a023a4c3391a7b801d4c/
YAMLFILEpdsp_beam_gen.yaml

File states

Total filesFindingUnallocatedAllocatedOutputtingProcessedNot foundFailed
4970000459038

Job states

TotalSubmittedStartedProcessingOutputtingFinishedNotusedAbortedStalledJobscript errorOutputting failedNone processed
1209000057736202482200
Files processed0010102020303040405050Jan-27 19:00Jan-27 20:00Jan-27 21:00Jan-27 22:00Jan-27 23:00Jan-28 00:00Jan-28 01:00Jan-28 02:00Jan-28 03:00Jan-28 04:00Jan-28 05:00Jan-28 06:00Jan-28 07:00Jan-28 08:00Jan-28 09:00Jan-28 10:00Jan-28 11:00Jan-28 12:00Jan-28 13:00Jan-28 14:00Jan-28 15:00Jan-28 16:00Files processedBin start timesNumber per binUS_FNAL-FermiG…US_FNAL-FermiGridUS_ColoradoUS_UChicagoUS_FNAL-T1CA_SFU
Replicas per RSE497490.025244.5497269.975244.50000000000003Replicas per RSEFNAL_DCACHE (50%)DUNE_US_FNAL_DISK_STAGE (50%)

RSEs used

NameInputsOutputs
DUNE_US_FNAL_DISK_STAGE729362
DUNE_US_BNL_SDCC075
DUNE_CA_SFU022

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

SiteAllocatedOutputting
US_FNAL-FermiGrid1810
US_Colorado100
US_UChicago60
US_FNAL-T150
US_UConn-HPC40
CA_SFU40

Jobscript

#!/bin/bash
#

#These must be defined
if [ -z $UTIL_TAR ]; then
  echo "Fatal must provide UTIL_TAR env var"
  exit 1
fi
export PYTHONPATH=$UTIL_TAR:$PYTHONPATH

source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune

if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

echo "Justin specific env vars"
env | grep JUSTIN
now=$(date -u +"%Y%m%dT%H%M%SZ")
jobid=`echo "${JUSTIN_JOBSUB_ID:-1}" | cut -f1 -d'@' | sed -e "s/\./_/"`
stageid=${JUSTIN_STAGE_ID:-1}
a=1
 if [ -n "$DUNESW_TAR" ]; then
   stat ${DUNESW_TAR}
   if [ $? -ne 0 ]; then
     echo "Failed to stat $DUNESW_TAR. Exiting safely"
     exit 0
   fi
 
   export PRODUCTS=$DUNESW_TAR:$PRODUCTS 
   echo "Set dunesw to $DUNESW_TAR"
 fi

 if [ -n "$WIRECELL_TAR" ]; then
   stat ${WIRECELL_TAR}
   if [ $? -ne 0 ]; then
     echo "Failed to stat $WIRECELL_TAR. Exiting safely"
     exit 0
   fi
 
   export PRODUCTS=$WIRECELL_TAR:$PRODUCTS 
   echo "Set wirecell to $WIRECELL_TAR"
 fi

 #Setup recent lar software suite
 DUNESW_VERSION=${DUNESW_VERSION:-v10_02_02d00}
 setup dunesw \
    "${DUNESW_VERSION}" \
    -q "${DUNE_QUALIFIER:-e26:prof}"
 
 setup_exit=$?
 if [ $? -ne 0 ]; then
   echo "Failed to setup dunesw $DUNESW_VERSION $DUNE_QUALIFIER"
   exit $setup_exit
 fi
 
 echo "DUNESW loc:"
 ups active | grep dunesw

 echo "WIRECELL loc:"
 ups active | grep wirecell
 
 
 echo "printing env"
 env
 echo "DUNE specific env vars"
 env | grep DUNE

# User can specify to pip install pyyaml
if [ -n "$pipyaml" ]; then
  echo "Installing yaml"
  pip install --user pyyaml
  echo "Done"
# elif [ -n "${YAML_TAR}" ]; then
#   echo "Using venv at ${YAML_TAR}"
#   source ${YAML_TAR}/yaml_venv/bin/activate
fi


 echo "Will use justin-get-file"
 DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
 if [ "${DID_PFN_RSE}" == "" ] ; then
   echo "Could not get file"
   exit 0
 fi
 pfn=`echo ${DID_PFN_RSE} | cut -f2 -d' '`
 did=`echo ${DID_PFN_RSE} | cut -f1 -d' '`
 
 input_filename=`echo $did | cut -f2 -d':'`
 echo "input file: $input_filename"

 echo "jobsub_id: ${JUSTIN_JOBSUB_ID:-1}"
 
 #Get run/subrun from parent if using input -- else from justin job ID/process"
 if [ -z "$MCJob" ]; then
   echo "Getting run subrun from $did"
   run_subrun=`python -m beam_job_utils get_run_subrun -i $did`
   get_run_ret=$?
   if [ $get_run_ret -ne 0 ]; then
     echo "error in get_run_subrun"
   fi
 
   echo $run_subrun
   run=`echo $run_subrun | cut -f1 -d' '`
   subrun=`echo $run_subrun | cut -f2 -d' '`
 else
   run=`echo $jobid | cut -f1 -d'_'`  ##TODO -- check order here
   subrun=`echo $jobid | cut -f2 -d'_'`
 fi
 nevents=${NEVENTS:--1} #Set from env override or -1 
 NSKIP=${NSKIP:-0} 
 echo "nevents: $nevents"
 
 overrides="core.data_tier=full-reconstructed \
  core.application.version=${DUNESW_VERSION} \
  core.application.name=reco \
  core.application.family=dunesw \
  core.application=dunesw.reco \
 "

#User specifies if they'd like to use an input file or not 
if [ -n "$MCJob" ]; then
  inputflag=""
else
  inputflag="-i $pfn --parent $did"
fi

echo "input flag: $inputflag"

# TODO -- metadata file configurable
python -m beam_job_utils run_job \
      --json ${UTIL_TAR}/${JSONFILE:-pdsp_beam_base_meta.json} \
      --overrides ${overrides} \
      --run $run \
      --subrun $subrun \
      --yaml ${UTIL_TAR}/${YAMLFILE:-pdsp_beam_gen.yaml} \
      --nevents $nevents \
      --event $NSKIP \
      $inputflag

exitcode=$?
if [ $exitcode -ne 0 ]; then
  echo "Error running. Exiting with ${exitcode}"
  exit $exitcode
fi

echo "$pfn" > justin-processed-pfns.txt
justIN time: 2025-04-03 07:34:31 UTC       justIN version: 01.03.00