Workflow 4230, Stage 1

Priority	50
Processors	1
Wall seconds	86400
Image	/cvmfs/singularity.opensciencegrid.org/fermilab/fnal-wn-sl7:latest
RSS bytes	4194304000 (4000 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_BNL, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage	RSE expression
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/pmelas/04230/1	output*.root

Environment variables

Name	Value
INPUT_TAR_DIR_LOCAL	/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/4663d2c895d4fdef4a764e8a470c189aab1c9584
NUM_EVENTS	100

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
737	0	0	0	0	0	735	2

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
3	0	0	0	0	1	0	0	2	0	0	0

RSEs used

Name	Inputs	Outputs
NIKHEF	2	0

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

Jobscript

#!/bin/bash

DUNE_VERSION=${DUNE_VERSION:-v09_09_00}

################################################################
# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
 events_option="-n $NUM_EVENTS"
fi

# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`

if [ "$did_pfn_rse" = "" ] ; then
  echo "Nothing to process - exit jobscript"
  exit 0
fi

# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt

# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"
##############################################################

# Setup DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
export PRODUCTS="${INPUT_TAR_DIR_LOCAL}/:$PRODUCTS" #working
setup dunetpc v09_09_00 -q e19:prof
FCL_GEN=${FCL_GEN:-prodcosmics_pdsp.fcl}
FCL_G4STAGE1=${FCL_G4STAGE1:-protoDUNE_refactored_g4_stage1.fcl}
FCL_G4STAGE2=${FCL_G4STAGE2:-protoDUNE_refactored_g4_stage2.fcl}
FCL_DETSIM1=${FCL_DETSIM1:-protoDUNE_refactored_detsim_stage1.fcl}
FCL_DETSIM2=${FCL_DETSIM2:-protoDUNE_refactored_g4_stage2_sce_datadriven.fcl}
FCL_RECO1=${FCL_RECO1:-protoDUNE_refactored_reco_35ms_sce_datadriven_stage1.fcl}
FCL_RECO2=${FCL_RECO2:-protoDUNE_refactored_reco_35ms_sce_datadriven_stage2.fcl}
FCL_ANA=${FCL_ANA:-$INPUT_TAR_DIR_LOCAL/protoduneana/v09_09_00/job/runMyModule22.fcl}

# Properly setup custom code with INPUT_TAR_DIR_LOCAL

export OMP_NUM_THREADS=${JUSTIN_PROCESSORS} 

######################################################################### 
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`
campaign="justIN.w${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"

outFile_GEN=${fname}_gen_${now}.root
outFile_G4Stage1=${fname}_g4_stage1_${now}.root
outFile_G4Stage2=${fname}_g4_stage2_${now}.root
outFile_Detsim=${fname}_detsim_${now}.root
outFile_Detsim2=${fname}_detsim2_${now}.root
outFile_reco=${fname}_reco_${now}.root
outFile_reco2=${fname}_reco2_${now}.root
outFile_ana=${fname}_ana_${now}.root
outFile_ana_hist=${fname}_ana_hist_${now}.root


(
# Do the scary preload stuff in a subshell!
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "$LD_PRELOAD"

lar $events_option -c protoDUNE_refactored_g4_stage1.fcl -S $INPUT_TAR_DIR_LOCAL/exp/dune/app/users/pmelas/v09_09_00/file_geno.txt -o g4_stage1.root

#lar $events_option -c prodcosmics_pdsp.fcl -o gen.root
#lar $events_option -c protoDUNE_refactored_g4_stage1.fcl gen.root -o g4_stage1.root
lar $events_option -c protoDUNE_refactored_g4_stage2_sce_datadriven.fcl g4_stage1.root -o g4_stage2.root
lar $events_option -c $INPUT_TAR_DIR_LOCAL/exp/dune/app/users/pmelas/v09_09_00/protoDUNE_refactored_detsim_stage1_pm.fcl g4_stage2.root -o detsim_stage1.root
lar $events_option -c protoDUNE_refactored_detsim_stage2.fcl detsim_stage1.root -o detsim_stage2.root
lar $events_option -c $INPUT_TAR_DIR_LOCAL/exp/dune/app/users/pmelas/v09_09_00/protoDUNE_refactored_reco_35ms_sce_datadriven_stage1_pm.fcl detsim_stage2.root -o reco_stage1.root
lar $events_option -c $INPUT_TAR_DIR_LOCAL/exp/dune/app/users/pmelas/v09_09_00/protoDUNE_refactored_reco_35ms_sce_datadriven_stage2_pm.fcl reco_stage1.root -o reco_stage2.root
lar $events_option -c $INPUT_TAR_DIR_LOCAL/exp/dune/app/users/pmelas/v09_09_00/runMyModule22.fcl reco_stage2.root -o output1.root
)

# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"
echo "$pfn" > justin-processed-pfns.txt

ls -lRS

# Create compressed tar file with all log files 
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
exit $jobscriptExit
#exit $larExit