Workflow 4143, Stage 1

Priority	50
Processors	1
Wall seconds	80000
RSS bytes	4194304000 (4000 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_BNL, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/ismerio/04143/1	Validation_.root

Environment variables

Name	Value
CODE_TAR_DIR_LOCAL	/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/2f8b37bfc4156a3a66f60ed1d7af82fe4c483fdb
DUNE_QUALIFIER	e26:prof
DUNE_VERSION	v09_91_02d01
FCL_FILE	/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/3ba134ac64f18a518f1cd496c59fbec6944962fc//exp/dune/app/users/ismerio/env-testreco/work/myreco.fcl
HAS_ART_OUTPUT	true
NUM_EVENTS	-1

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
1	0	0	0	0	0	0	1

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
13	0	0	0	0	0	0	0	0	0	13	0

RSEs used

Name	Inputs	Outputs
PRAGUE	6	0

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
CZ_FZU	0	3
UK_RAL-PPD	0	2

Jobscript

#!/bin/bash
:<<'EOF'

To use this jobscript to process 10 files from the dc4-vd-coldbox-bottom
data and put the output in the usertests namespace (MetaCat) and 
scope (Rucio), and in the usertests:output-test-01 dataset in MetaCat and
Rucio, use this command to create the workflow:

justin simple-workflow \
--mql "files from justin-tutorial:justin-tutorial-2024 limit 10" \
--jobscript dc4-vd-coldbox-bottom.jobscript --max-distance 30 --rss-mb 4000 \
--scope usertests --output-pattern '*_reco_data_*.root:output-test-01' \
--lifetime-days 1

The following optional environment variables can be set when creating the
workflow/stage: FCL_FILE, NUM_EVENTS, DUNE_VERSION, DUNE_QUALIFIER 

EOF

# fcl file and DUNE software version/qualifier to be used
FCL_FILE=${FCL_FILE:-myreco_beam.fcl}
DUNE_VERSION=${DUNE_VERSION:-v09_91_02d01}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}
HAS_ART_OUTPUT=${HAS_ART_OUTPUT:true}

# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
 events_option="-n $NUM_EVENTS"
fi

# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`

if [ "$did_pfn_rse" = "" ] ; then
  echo "Nothing to process - exit jobscript"
  exit 0
fi

# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"

# Setup DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh

# the xroot lib for streaming non-root files is in testproducts, 
# so add it to the start of the path
#export PRODUCTS=/cvmfs/dune.opensciencegrid.org/products/dune/testproducts:${PRODUCTS}
export INPUT_TAR_DIR_LOCAL=${CODE_TAR_DIR_LOCAL}
export PRODUCTS="${INPUT_TAR_DIR_LOCAL}/localProducts_larsoft_v09_91_02_e26_prof/:$PRODUCTS"
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"




#if [ ! -z "$CODE_TAR_DIR_LOCAL" ]; then
#	echo "Using custom sources from $CODE_TAR_DIR_LOCAL"
#	source ${CODE_TAR_DIR_LOCAL}/localProducts*/setup
#	mrbslp
#fi


# Construct outFile from input $pfn 
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`
outFile=${fname}_reco_data_${now}.root

campaign="justIN.w${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"
if [ "$HAS_ART_OUTPUT" = true ];then
  OUTPUT_CMD="-o $outFile"
  echo "Art output set to $outFile"
else
  OUTPUT_CMD="-T ${fname}_ana_${now}.root"
fi

echo "Contents of $INPUT_TAR_DIR_LOCAL:"
ls ${CODE_TAR_DIR_LOCAL} 
export FW_SEARCH_PATH=${CODE_TAR_DIR_LOCAL}:$FW_SEARCH_PATH #Necessary for the local path to be searched first for xml files.
#echo "$FW_SEARCH_PATH"

(
# Do the scary preload stuff in a subshell!
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "$LD_PRELOAD"


lar -c $FCL_FILE $events_option $OUTPUT_CMD "$pfn" > ${fname}_reco_${now}.log 2>&1 
mv Validation_ccnc.root Validation_ccnc_${fname}.root
)

# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"

echo '=== Start last 100 lines of lar log file ==='
tail -200 ${fname}_reco_${now}.log
echo '=== End last 100 lines of lar log file ==='

if [ $larExit -eq 0 ] ; then
  # Success !
  echo "$pfn" > justin-processed-pfns.txt
  jobscriptExit=0
else
  # Oh :(
  jobscriptExit=1
fi

ls 
ls ${CODE_TAR_DIR_LOCAL} 

# Create compressed tar file with all log files 
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
exit $jobscriptExit