Workflow 4095, Stage 1

Priority	50
Processors	1
Wall seconds	3600
RSS bytes	6291456000 (6000 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_BNL, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/chappell/sec_vtx/04095/1	*.csv

Environment variables

Name	Value
INPUT_TAR_DIR_LOCAL	/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/af8fa889da2d7a9e27183a56aad2c6a7406a99a5
NUM_EVENTS	100

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
10	0	0	0	0	10	0	0

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
29	0	0	0	0	28	0	0	1	0	0	0

RSEs used

Name	Inputs	Outputs
DUNE_US_FNAL_DISK_STAGE	10	0
DUNE_FR_CCIN2P3_DISK	1	0

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
US_PuertoRico	1	0

Jobscript

#!/bin/bash
# fcl file and DUNE software version/qualifier to be used
FCL_FILE=pndr.fcl
DUNE_VERSION=${DUNE_VERSION:-v09_92_00d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}
FW_SEARCH_PATH=.:$INPUT_TAR_DIR_LOCAL:$FW_SEARCH_PATH
FHICL_FILE_PATH=.:INPUT_TAR_DIR_LOCAL:$FHICL_FILE_PATH
echo $FW_SEARCH_PATH

cp $INPUT_TAR_DIR_LOCAL/pndr.fcl .
cp $INPUT_TAR_DIR_LOCAL/setup-grid .
cp -r $INPUT_TAR_DIR_LOCAL/localProducts* .

# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
 events_option="-n $NUM_EVENTS"
fi

# Setup DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh

# the xroot lib for streaming non-root files is in testproducts, 
# so add it to the start of the path
export PRODUCTS=/cvmfs/dune.opensciencegrid.org/products/dune/testproducts:${PRODUCTS}
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS} 

source setup-grid
mrbslp

for i in {0..19}; do
    # First get an unprocessed file from this stage
    did_pfn_rse=`$JUSTIN_PATH/justin-get-file`

    if [ "$did_pfn_rse" = "" ] ; then
      echo "Nothing to process - exit jobscript"
      break
    fi

    # Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
    echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt

    # pfn is also needed when creating justin-processed-pfns.txt
    pfn=`echo $did_pfn_rse | cut -f2 -d' '`
    echo "Input PFN ${i} = $pfn"

    # Construct outFile from input $pfn 
    now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
    Ffname=`echo $pfn | awk -F/ '{print $NF}'`
    fname=`echo $Ffname | awk -F. '{print $1}'`

    campaign="justIN.r${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"

    (
    # Do the scary preload stuff in a subshell!
    export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
    echo "$LD_PRELOAD"

    lar -c $FCL_FILE $events_option "$pfn" > ${fname}_reco_${now}.log 2>&1
    )

    # Subshell exits with exit code of last command
    larExit=$?
    echo "lar exit code $larExit"
    echo "$pfn" > justin-processed-pfns.txt

    ls -l *.csv
done

mv SecVtx_CaloHitListU.csv SecVtx_CaloHitListU_${fname}.csv
mv SecVtx_CaloHitListV.csv SecVtx_CaloHitListV_${fname}.csv
mv SecVtx_CaloHitListW.csv SecVtx_CaloHitListW_${fname}.csv

echo "Post loop ${fname}"
ls -l *.csv

# Create compressed tar file with all log files 
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
exit $larExit