Workflow 4083, Stage 1
| Priority | 50 |
| Processors | 1 |
| Wall seconds | 80000 |
| RSS bytes | 4193255424 (3999 MiB) |
| Max distance for inputs | 100.0 |
| Enabled input RSEs |
CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC |
| Enabled output RSEs |
CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC |
| Enabled sites |
BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-PPD, UK_RAL-Tier1, UK_Sheffield, US_BNL, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin |
| Scope | usertests |
| Events for this stage |
Output patterns
| | Destination | Pattern | Lifetime | For next stage |
|---|
| 1 | Rucio usertests:fardet-hd-reco_4083 | *reco.root | 864000 | False |
Environment variables
| Name | Value |
|---|
| INPUT_DIR | /cvmfs/fifeuser3.opensciencegrid.org/sw/dune/510921dc1b8cdc6beb5cd1024b77ab4a72f31866 |
File states
| Total files | Finding | Unallocated | Allocated | Outputting | Processed | Not found | Failed |
|---|
|
| 10 | 0 | 0 | 0 | 0 | 10 | 0 | 0 |
Job states
| Total | Submitted | Started | Processing | Outputting | Finished | Notused | Aborted | Stalled | Jobscript error | Outputting failed | None processed |
|---|
| 15 | 0 | 0 | 0 | 0 | 15 | 0 | 0 | 0 | 0 | 0 | 0 |
RSEs used
| Name | Inputs | Outputs |
|---|
| MONTECARLO | 10 | 0 |
| RAL_ECHO | 0 | 6 |
| QMUL | 0 | 2 |
| SURFSARA | 0 | 2 |
Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)
Jobscript
#!/bin/bash
#
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune
#Setup recent lar software suite
setup dunesw \
"${DUNE_VERSION:-v09_91_04d00}" \
-q "${DUNE_QUALIFIER:-e26:prof}"
echo "printing env"
if [ -z ${JUSTIN_PROCESSORS} ]; then
JUSTIN_PROCESSORS=1
fi
echo "Justin processors: ${JUSTIN_PROCESSORS}"
export TF_NUM_THREADS=${JUSTIN_PROCESSORS}
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS}
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS}
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS}
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS}
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}
#env
echo "Will use justin-get-file"
DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
if [ "${DID_PFN_RSE}" == "" ] ; then
echo "Could not get file"
exit 0
fi
pfn=`echo ${DID_PFN_RSE} | cut -f2 -d' '`
if [ -z ${LINENUMBER} ] ; then
LINENUMBER=$pfn
fi
# echo "linenumber " $LINENUMBER
ex_code=0
pstep=10
tstep=0
now=$(date -u +"%Y%m%dT%H%M%SZ")
namespace=${JUSTIN_SCOPE:-"usertests"}
echo "===============JUSTIN_JOBSUB_ID"
runid=$JUSTIN_WORKFLOW_ID
CLUSTER=`echo $JUSTIN_JOBSUB_ID | awk '{split($0,a,"."); print a[1]}'`
echo $CLUSTER
# define run number and set number of events
firstsubrun=0
nevts=10
e_pfn=$(echo "$pfn" | sed 's/^0*//')
start_e_pfn=$((e_pfn -1))
firstevent=$((start_e_pfn * nevts + 1))
echo "======checking===="
echo ${DID_PFN_RSE}
echo ${pfn}
echo $runid
echo $firstsubrun
echo $nevts
echo $firstevent
# Run Generator
echo "============generator========================="
prodname="prodmarley_nue_es_flat_dune10kt_1x2x6_${now}_gen_${pfn}"
istep=1
tstep=$((tstep+1))
nstep=$(($pstep*$tstep))
tcode=$((nstep+istep))
tcode=$((tcode*1000))
#lar -c prodmarley_nue_es_flat_dune10kt_1x2x6.fcl -o ${prodname}.root -n 1
lar -c prodmarley_nue_es_flat_dune10kt_1x2x6.fcl -o ${prodname}.root -n $nevts -e ${runid}:${firstsubrun}:${firstevent}
exit_code=$?
ex_code=$((exit_code+tcode))
files=`ls *_${now}_*`
if [ $exit_code -ne 0 ]; then
echo "ERROR: lar (generation) exit code: $ex_code "
echo "output files size: "
for f in $files
do
size=`stat -c %s $f`
echo $f $size
done
return $ex_code
fi
# Stage 1 G4
echo "============G4 stage1========================="
g4_name="${prodname}_supernova_g4"
tstep=$((tstep+1))
nstep=$(($pstep*$tstep))
istep=1
tcode=$((nstep+istep))
tcode=$((tcode*1000))
lar -c supernova_g4_dune10kt_1x2x6.fcl ${prodname}.root -o ${g4_name}.root -n -1
exit_code=$?
ex_code=$((exit_code+tcode))
files=`ls *_${now}_*`
if [ $exit_code -ne 0 ]; then
echo "ERROR: lar (geant4 step1) exit code: $ex_code "
echo "output files size: "
for f in $files
do
size=`stat -c %s $f`
echo $f $size
done
return $ex_code
fi
# Stage 2 G4
tstep=$((tstep+1))
nstep=$(($pstep*$tstep))
istep=1
tcode=$((nstep+istep))
tcode=$((tcode*1000))
# Detsim
echo "============detsim========================="
detsim_name="${g4_name}_detsim"
tstep=$((tstep+1))
nstep=$(($pstep*$tstep))
istep=1
tcode=$((nstep+istep))
tcode=$((tcode*1000))
lar -c standard_detsim_dune10kt_1x2x6.fcl ${g4_name}.root -o ${detsim_name}.root -n -1
exit_code=$?
ex_code=$((exit_code+tcode))
files=`ls *_${now}_*`
if [ $exit_code -ne 0 ]; then
echo "ERROR: lar (detsim) exit code: $ex_code "
echo "output files size: "
for f in $files
do
size=`stat -c %s $f`
echo $f $size
done
return $ex_code
fi
# Reco
echo "============reco ========================="
reco_name="${detsim_name}_reco"
tstep=$((tstep+1))
nstep=$(($pstep*$tstep))
istep=1
tcode=$((nstep+istep))
tcode=$((tcode*1000))
lar -c reco1_supernova_dune10kt_1x2x6.fcl ${detsim_name}.root -o ${reco_name}.root -n -1
exit_code=$?
ex_code=$((exit_code+tcode))
files=`ls *_${now}_*`
if [ $exit_code -ne 0 ]; then
echo "ERROR: lar (reco) exit code: $ex_code "
echo "output files size: "
for f in $files
do
size=`stat -c %s $f`
echo $f $size
done
return $ex_code
fi
istep=$((istep+1))
tcode=$((nstep+istep))
tcode=$((tcode*1000))
extractor_prod.py --infile ${reco_name}.root --no_crc --appfamily art --appname reco --appversion v09_91_04d00 --requestid ritm2205749 --strip_parents --input_json ${INPUT_DIR}/le_input.json> ${reco_name}.root.ext.json && sed -i -e 's/stepfcl/reco1_supernova_dune10kt_1x2x6.fcl/g' ${reco_name}.root.ext.json
exit_code=$?
ex_code=$((exit_code+tcode))
files=`ls *_${now}_*`
if [ $exit_code -gt 1 ]; then
echo "ERROR: metadata generation $ex_code "
echo "output files size: "
for f in $files
do
size=`stat -c %s $f`
echo $f $size
done
return $ex_code
fi
rm -fr all-input-dids.txt
echo "noparents:noparents.root" > all-input-dids.txt
python ${INPUT_DIR}/pdjson2metadata ${reco_name}.root.ext.json all-input-dids.txt usertests > ${reco_name}.root.json
exit_code=$?
ex_code=$((exit_code+tcode))
files=`ls *_${now}_*`
if [ $exit_code -ne 0 ]; then
echo "ERROR: metadata writing $ex_code "
echo "output files size: "
for f in $files
do
size=`stat -c %s $f`
echo $f $size
done
return $ex_code
fi
if [ $? -ne 0 ]
then
echo "Exiting with error"
exit 1
else
files=`ls *_${now}_*`
for f in $files
do
size=`stat -c %s $f`
echo "written output file: $f $size"
done
echo "$pfn" > justin-processed-pfns.txt
fi
