Workflow 4043, Stage 1

Priority	50
Processors	1
Wall seconds	80000
RSS bytes	4193255424 (3999 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CA_SFU, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_RAL-Tier1, UK_Sheffield, US_BNL, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/calcuttj/pduneana_ntuples/11_10_24_1GeV/07/04043/1	*root

Environment variables

Name	Value
FCL_FILE	pduneana_Prod4a_MC_sce.fcl
NFILES	10
NTUPLE_DIR	/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/0b0e77e50bec3aa86c8944031b79d1ae68ae0216
PROTODUNEANA_TAR	/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/27210e1ddd13bdb8421f162d87b8743ac12095a3

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
7111	0	0	0	0	7111	0	0

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
5069	0	0	0	0	5040	0	0	1	20	0	8

RSEs used

Name	Inputs	Outputs
DUNE_UK_LANCASTER_CEPH	7321	0

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
UK_Imperial	10	0

Jobscript

#!/bin/bash
#

#These must be defined
if [ -z $FCL_FILE ]; then
  echo "Fatal Must provide FCL_FILE env var"
  exit 1
fi

if [ -z $NTUPLE_DIR ]; then
  echo "Fatal Must provide NTUPLE_DIR env var"
  exit 1
fi

stat ${NTUPLE_DIR}
if [ $? -ne 0 ]; then
  echo "Failed to $NTUPLE_DIR. Exiting safely"
  exit 0
fi

source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune

if [ -n "$PROTODUNEANA_TAR" ]; then
  stat ${PROTODUNEANA_TAR}
  if [ $? -ne 0 ]; then
    echo "Failed to stat $PROTODUNEANA_TAR. Exiting safely"
    exit 0
  fi

  export PRODUCTS=$PROTODUNEANA_TAR:$PRODUCTS 
  echo "Set protoduneana to $PROTODUNEANA_TAR"
fi

if [ -n "$GEANT4REWEIGHT_TAR" ]; then
  stat ${GEANT4REWEIGHT_TAR}
  if [ $? -ne 0 ]; then
    echo "Failed to stat $GEANT4REWEIGHT_TAR. Exiting safely"
    exit 0
  fi

  export PRODUCTS=$GEANT4REWEIGHT_TAR:$PRODUCTS 
  echo "Set protoduneana to $GEANT4REWEIGHT_TAR"
fi


#Setup recent lar software suite
DUNE_VERSION=${DUNE_VERSION:-v09_81_00d01}
setup dunesw \
   "${DUNE_VERSION}" \
   -q "${DUNE_QUALIFIER:-e26:prof}"

setup_exit=$?
if [ $? -ne 0 ]; then
  echo "Failed to setup dunesw $DUNE_VERSION $DUNE_QUALIFIER"
  exit $setup_exit
fi


echo "DUNESW loc:"
ups active | grep dunesw

if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

echo "printing env"
env

echo "Justin specific env vars"
env | grep JUSTIN

echo "Will use justin-get-file"
#

nfiles=${NFILES:-1}

python $NTUPLE_DIR/ntuple_prod_utils.py get_nfiles_justin \
    -n $nfiles \
    --dids input_dids.list \
    --pfns input_pfns.list

#pfn_exit=$?
#if [ $pfn_exit -ne 0 ]; then
#  echo "Error in get_nfiles_justin. Exiting"
#  exit $pfn_exit
#fi

n_files_retrieved=`wc -l input_pfns.list | cut -f1 -d' '`
echo "Files retrieved: ${n_files_retrieved}"

if [ $n_files_retrieved -eq 0 ]; then
  echo "No files retrieved. Exiting safely"
  exit 0
fi

pfn_list=`cat input_pfns.list`
echo "PFN list:"
echo $pfn_list

now=$(date -u +"%Y%m%dT%H%M%SZ")

##TODO -- edit this
#jobid=`echo "${JUSTIN_JOBSUB_ID:-1}" | awk -F '.' '{print $1}'`
jobid=`echo "${JUSTIN_JOBSUB_ID:-1}" | cut -f1 -d'@' | sed -e "s/\./_/"`
PREFIX=${PREFIX:-"pdspana"}
OUTFILE="${PREFIX}_${jobid}_${JUSTIN_STAGE_ID}_${JUSTIN_WORKFLOW_ID}_${now}.root"


nevents=${NEVENTS:--1}

echo "Running pdspana"
touch ana.log
starttime=`date +"%s"`.0
lar -c ${FCL_FILE} \
    -n ${nevents} \
    -T ${OUTFILE} \
    -s ${pfn_list}  >ana.log 2>&1
larExit=$?
endtime=`date +"%s"`.0

if [ $larExit -ne 0 ]; then
  echo "Error in ntuple production"
  cat ana.log
  exit $larExit
fi

echo "Ran successfully"

echo "Forming metadata"

### Get the metadata
python $NTUPLE_DIR/ntuple_prod_utils.py \
  metadata \
  --root_file ${OUTFILE} \
  --dids input_dids.list \
  --version ${DUNE_VERSION} \
  --fcl_name ${FCL_FILE} \
  -o $OUTFILE.json
  #--log_file md.log \
mdExit=$?
if [ $mdExit -ne 0 ]; then
  echo "Error in ntuple metdata production"
  cat md.log
  exit $mdExit
fi

echo "formed"
cat ${OUTFILE}.json

echo "$pfn_list" > justin-processed-pfns.txt