Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)
File reset events, by site
Site
Allocated
Outputting
US_NotreDame
648
17
UK_Manchester
281
352
UK_Edinburgh
211
31
US_FNAL-FermiGrid
164
191
CZ_FZU
128
205
CERN
124
269
US_PuertoRico
109
1
ES_PIC
49
84
FR_CCIN2P3
40
71
UK_RAL-Tier1
32
76
UK_Imperial
32
81
US_UChicago
20
31
UK_Liverpool
15
11
UK_Brunel
15
11
US_Colorado
12
17
UK_Lancaster
10
44
UK_Durham
8
15
US_FNAL-T1
6
6
CA_SFU
5
0
US_Wisconsin
5
2
US_UConn-HPC
3
13
Jobscript
#!/bin/bash
:<<'EOF'
To use this jobscript to process 10 files from the dc4-vd-coldbox-bottom
data and put the output in the usertests namespace (MetaCat) and
scope (Rucio), and in the usertests:output-test-01 dataset in MetaCat and
Rucio, use this command to create the workflow:
justin simple-workflow \
--mql \
"files from dune:all where core.run_type='dc4-vd-coldbox-bottom' and dune.campaign='dc4' limit 10" \
--jobscript dc4-vd-coldbox-bottom.jobscript --max-distance 30 --rss-mb 4000 \
--scope usertests --output-pattern '*_reco_data_*.root:output-test-01'
The following optional environment variables can be set when creating the
workflow/stage: FCL_FILE, NUM_EVENTS, DUNE_VERSION, DUNE_QUALIFIER
EOF
# fcl file and DUNE software version/qualifier to be used
FCL_FILE=MyrunSingleHit_PDHD.fcl
DUNE_VERSION=${DUNE_VERSION:-v10_00_02d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}
# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
events_option="-n $NUM_EVENTS"
fi
# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`
if [ "$did_pfn_rse" = "" ] ; then
echo "Nothing to process - exit jobscript"
exit 0
fi
# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt
# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"
# Setup DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
export PRODUCTS=$INPUT_TAR_DIR_LOCAL:${PRODUCTS}
echo "PRODUCTS: ${PRODUCTS}"
echo "DUNESW_DIR: ${DUNESW_DIR}"
# Properly setup custom code with INPUT_TAR_DIR_LOCAL
export DUNESW_DIR=${INPUT_TAR_DIR_LOCAL}/dunesw/${DUNE_VERSION}
export DUNESW_FQ_DIR=${DUNESW_DIR}/slf7.x86_64.e26.prof
export DUNESW_LIB=${DUNESW_FQ_DIR}/lib
export PROTODUNEANA_DIR=${INPUT_TAR_DIR_LOCAL}/protoduneana/${DUNE_VERSION}
export PROTODUNEANA_LIB=${PROTODUNEANA_DIR}/include
export PROTODUNEANA_FQ_DIR=${PROTODUNEANA_DIR}/slf7.x86_64.e26.prof
export PROTODUNEANA_LIB=${PROTODUNEANA_FQ_DIR}/lib
#export WIRECELL_PATH=${DUNE_PARDATA_DIR}/WireCellData
#export WIRECELL_PATH=${WIRECELL_DIR}/Linux64bit+3.10-2.17-e26-prof/share/wirecell:${WIRECELL_PATH}
#export WIRECELL_PATH=${PROTODUNEANADIR}/wire-cell-cfg:${WIRECELL_PATH}
export DUNEPROTOTYPES_DIR=${INPUT_TAR_DIR_LOCAL}/duneprototypes/${DUNE_VERSION}
export DUNEPROTOTYPES_INC=${DUNEPROTOTYPES_DIR}/include
export DUNEPROTOTYPES_FQ_DIR=${DUNEPROTOTYPES_DIR}/slf7.x86_64.e26.prof
export DUNEPROTOTYPES_LIB=${DUNEPROTOTYPES_FQ_DIR}/lib
export FHICL_FILE_PATH=${DUNESW_DIR}/fcl:${FHICL_FILE_PATH}
export FHICL_FILE_PATH=${DUNEPROTOTYPES_DIR}/fcl:${FHICL_FILE_PATH}
export FHICL_FILE_PATH=${PROTODUNEANA_DIR}/fcl:${FHICL_FILE_PATH}
export FHICL_FILE_PATH=${INPUT_TAR_DIR_LOCAL}/myfcl:${FHICL_FILE_PATH}
echo "DUNESW_DIR: ${DUNESW_DIR}"
echo "PROTODUNEANA_DIR: ${PROTODUNEANA_DIR}"
echo "DUNEPROTOTYPES_DIR: ${DUNEPROTOTYPES_DIR}"
#echo "WIRECELL_PATH: ${WIRECELL_PATH}"
#echo "FHICL_FILE_PATH: ${FHICL_FILE_PATH}"
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}
source "${INPUT_TAR_DIR_LOCAL}/localProducts_larsoft_v10_00_02d00_prof_e26/setup2"
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
echo " VERSION ACTIVE = VERSION ACTIVE = VERSION ACTIVE = "
ups active | grep "dunesw\|duneprototypes"
mrbslp
# Construct outFile from input $pfn
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`
outFile=${fname}_singleHit_${now}.root
campaign="justIN.r${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"
(
# Do the scary preload stuff in a subshell!
#export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
#echo "$LD_PRELOAD"
lar -c ${INPUT_TAR_DIR_LOCAL}/myfcl/$FCL_FILE $events_option -T $outFile "$pfn" > ${fname}_singleHit${now}.log 2>&1
)
# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"
echo "$pfn" > justin-processed-pfns.txt
ls -lRS
# Create compressed tar file with all log files
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
#exit $jobscriptExit
exit $larExit
justIN time: 2024-11-17 05:42:20 UTC justIN version: 01.01.09
