Workflow 3624, Stage 1

Priority	50
Processors	1
Wall seconds	80000
RSS bytes	4194304000 (4000 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MANCHESTER, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MANCHESTER, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_RAL-Tier1, UK_Sheffield, US_BNL, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/lavaut/03624/1	singleHit.*

Environment variables

Name	Value
INPUT_TAR_DIR_LOCAL	/cvmfs/fifeuser4.opensciencegrid.org/sw/dune/3f0228115a850334f7ebe77c57d029820c907147

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
100000	3000	96216	0	0	0	22	762

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
13212	0	0	0	0	1	0	143	551	245	12194	78

RSEs used

Name	Inputs	Outputs
RAL-PP	3944	0
RAL_ECHO	3168	0
DUNE_ES_PIC	2399	0
PRAGUE	2075	0
SURFSARA	461	0
DUNE_US_BNL_SDCC	368	0
DUNE_CERN_EOS	274	0
DUNE_FR_CCIN2P3_DISK	161	0
NIKHEF	112	0
DUNE_US_FNAL_DISK_STAGE	10	0

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
UK_Manchester	71	2502
UK_Edinburgh	69	115
CZ_FZU	69	2613
UK_Lancaster	68	2281
CERN	45	1452
UK_Liverpool	13	818
ES_PIC	13	522
UK_RAL-Tier1	10	489
US_FNAL-FermiGrid	8	201
US_Colorado	3	32
UK_Brunel	2	368
FR_CCIN2P3	1	61
UK_Durham	1	56
US_UConn-HPC	1	96
US_NotreDame	1	2
US_FNAL-T1	0	7

Jobscript

#!/bin/bash
:<<'EOF'

To use this jobscript to process 10 files from the dc4-vd-coldbox-bottom
data and put the output in the usertests namespace (MetaCat) and 
scope (Rucio), and in the usertests:output-test-01 dataset in MetaCat and
Rucio, use this command to create the workflow:

justin simple-workflow \
--mql \
"files from dune:all where core.run_type='dc4-vd-coldbox-bottom' and dune.campaign='dc4' limit 10" \
--jobscript dc4-vd-coldbox-bottom.jobscript --max-distance 30 --rss-mb 4000 \
--scope usertests --output-pattern '*_reco_data_*.root:output-test-01' 

The following optional environment variables can be set when creating the
workflow/stage: FCL_FILE, NUM_EVENTS, DUNE_VERSION, DUNE_QUALIFIER 

EOF

# fcl file and DUNE software version/qualifier to be used
FCL_FILE=MyrunSingleHit_PDHD.fcl
DUNE_VERSION=${DUNE_VERSION:-v09_91_00d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}

# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
 events_option="-n $NUM_EVENTS"
fi

# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`

if [ "$did_pfn_rse" = "" ] ; then
  echo "Nothing to process - exit jobscript"
  exit 0
fi

# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt

# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"

# Setup DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh

export PRODUCTS=$INPUT_TAR_DIR_LOCAL:${PRODUCTS}
echo "PRODUCTS: ${PRODUCTS}"
echo "DUNESW_DIR: ${DUNESW_DIR}"


# Properly setup custom code with INPUT_TAR_DIR_LOCAL

export DUNESW_DIR=${INPUT_TAR_DIR_LOCAL}/dunesw/${DUNE_VERSION}
export DUNESW_FQ_DIR=${DUNESW_DIR}/slf7.x86_64.e26.prof
export DUNESW_LIB=${DUNESW_FQ_DIR}/lib

export PROTODUNEANA_DIR=${INPUT_TAR_DIR_LOCAL}/protoduneana/${DUNE_VERSION}
export PROTODUNEANA_LIB=${PROTODUNEANA_DIR}/include
export PROTODUNEANA_FQ_DIR=${PROTODUNEANA_DIR}/slf7.x86_64.e26.prof
export PROTODUNEANA_LIB=${PROTODUNEANA_FQ_DIR}/lib

#export WIRECELL_PATH=${DUNE_PARDATA_DIR}/WireCellData
#export WIRECELL_PATH=${WIRECELL_DIR}/Linux64bit+3.10-2.17-e26-prof/share/wirecell:${WIRECELL_PATH}
#export WIRECELL_PATH=${PROTODUNEANADIR}/wire-cell-cfg:${WIRECELL_PATH}

export DUNEPROTOTYPES_DIR=${INPUT_TAR_DIR_LOCAL}/duneprototypes/${DUNE_VERSION}
export DUNEPROTOTYPES_INC=${DUNEPROTOTYPES_DIR}/include
export DUNEPROTOTYPES_FQ_DIR=${DUNEPROTOTYPES_DIR}/slf7.x86_64.e26.prof
export DUNEPROTOTYPES_LIB=${DUNEPROTOTYPES_FQ_DIR}/lib

export FHICL_FILE_PATH=${DUNESW_DIR}/fcl:${FHICL_FILE_PATH}
export FHICL_FILE_PATH=${DUNEPROTOTYPES_DIR}/fcl:${FHICL_FILE_PATH}
export FHICL_FILE_PATH=${PROTODUNEANA_DIR}/fcl:${FHICL_FILE_PATH}
export FHICL_FILE_PATH=${INPUT_TAR_DIR_LOCAL}/myfcl:${FHICL_FILE_PATH}

echo "DUNESW_DIR: ${DUNESW_DIR}"
echo "PROTODUNEANA_DIR: ${PROTODUNEANA_DIR}"
echo "DUNEPROTOTYPES_DIR: ${DUNEPROTOTYPES_DIR}"

#echo "WIRECELL_PATH: ${WIRECELL_PATH}"
#echo "FHICL_FILE_PATH: ${FHICL_FILE_PATH}"


export OMP_NUM_THREADS=${JUSTIN_PROCESSORS} 

source "${INPUT_TAR_DIR_LOCAL}/localProducts_larsoft_v09_91_00d00_prof_e26/setup2"
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"

echo " VERSION ACTIVE =  VERSION ACTIVE =  VERSION ACTIVE = "
ups active | grep "dunesw\|duneprototypes"
mrbslp

# Construct outFile from input $pfn 
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`
outFile=${fname}_singleHit_${now}.root

campaign="justIN.r${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"

(
# Do the scary preload stuff in a subshell!
#export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
#echo "$LD_PRELOAD"
lar -c ${INPUT_TAR_DIR_LOCAL}/myfcl/$FCL_FILE $events_option -T $outFile "$pfn" > ${fname}_singleHit${now}.log 2>&1
)

# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"
echo "$pfn" > justin-processed-pfns.txt

ls -lRS

# Create compressed tar file with all log files 
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
#exit $jobscriptExit
exit $larExit