Workflow 3611, Stage 1

Priority	50
Processors	1
Wall seconds	36000
RSS bytes	4194304000 (4000 MiB)
Max distance for inputs	100.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MANCHESTER, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MANCHESTER, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_RAL-Tier1, UK_Sheffield, US_BNL, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/ykermaid/03611/1	pdvd_rn222_.

Environment variables

Name	Value
INPUT_TAR_DIR_LOCAL	/cvmfs/fifeuser4.opensciencegrid.org/sw/dune/b49748a24ef87783576cd8c15c2988c4a604f8f9
KEY	rn222
NUM_EVENTS	20

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
50	0	0	0	0	50	0	0

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
121	0	0	0	0	89	0	0	0	2	29	1

RSEs used

Name	Inputs	Outputs
MONTECARLO	81	0

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
UK_Manchester	0	11
UK_RAL-Tier1	0	5
UK_Liverpool	0	4
CZ_FZU	0	3
US_FNAL-FermiGrid	0	3
US_Colorado	0	2
UK_Durham	0	1

Jobscript

#!/bin/bash
:<<'EOF'

To use this jobscript to process 10 files from the dc4-vd-coldbox-bottom
data and put the output in the usertests namespace (MetaCat) and 
scope (Rucio), and in the usertests:output-test-01 dataset in MetaCat and
Rucio, use this command to create the workflow:

justin simple-workflow \
--mql \
"files from dune:all where core.run_type='dc4-vd-coldbox-bottom' and dune.campaign='dc4' limit 10" \
--jobscript dc4-vd-coldbox-bottom.jobscript --max-distance 30 --rss-mb 4000 \
--scope usertests --output-pattern '*_reco_data_*.root:output-test-01' 

The following optional environment variables can be set when creating the
workflow/stage: FCL_FILE, NUM_EVENTS, DUNE_VERSION, DUNE_QUALIFIER 

EOF

# fcl file and DUNE software version/qualifier to be used
FCL_GEN_FILE=gen_protodunevd_${KEY}.fcl
FCL_ST1_FILE=protodunevd_refactored_g4_stage1.fcl
FCL_ST2_FILE=protodunevd_refactored_g4_stage2.fcl
FCL_DET_FILE=protodunevd_refactored_detsim.fcl
FCL_REC_FILE=protodunevd_reco.fcl

DUNE_VERSION=${DUNE_VERSION:-v09_91_04d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}

# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
 events_option="-n $NUM_EVENTS"
fi

# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`

if [ "$did_pfn_rse" = "" ] ; then
  echo "Nothing to process - exit jobscript"
  exit 0
fi

# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt

# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"

# Setup DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh

export PRODUCTS=$INPUT_TAR_DIR_LOCAL:${PRODUCTS}

echo "PRODUCTS: ${PRODUCTS}"

setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"

export DUNESW_DIR=${INPUT_TAR_DIR_LOCAL}/dunesw/${DUNE_VERSION}
export DUNESW_FQ_DIR=${DUNESW_DIR}/slf7.x86_64.e26.prof
export DUNESW_LIB=${DUNESW_FQ_DIR}/lib

export PROTODUNEANA_DIR=${INPUT_TAR_DIR_LOCAL}/protoduneana/${DUNE_VERSION}
export PROTODUNEANA_LIB=${PROTODUNEANA_DIR}/include
export PROTODUNEANA_FQ_DIR=${PROTODUNEANA_DIR}/slf7.x86_64.e26.prof
export PROTODUNEANA_LIB=${PROTODUNEANA_FQ_DIR}/lib

export DUNERECO_DIR=${INPUT_TAR_DIR_LOCAL}/dunereco/${DUNE_VERSION}
export DUNERECO_LIB=${DUNERECO_DIR}/include
export DUNERECO_FQ_DIR=${DUNERECO_DIR}/slf7.x86_64.e26.prof
export DUNERECO_LIB=${DUNERECO_FQ_DIR}/lib

export DUNEPROTOTYPES_DIR=${INPUT_TAR_DIR_LOCAL}/duneprototypes/${DUNE_VERSION}
export DUNEPROTOTYPES_INC=${DUNEPROTOTYPES_DIR}/include
export DUNEPROTOTYPES_FQ_DIR=${DUNEPROTOTYPES_DIR}/slf7.x86_64.e26.prof
export DUNEPROTOTYPES_LIB=${DUNEPROTOTYPES_FQ_DIR}/lib

export FHICL_FILE_PATH=${DUNESW_DIR}/fcl:${FHICL_FILE_PATH}
export FHICL_FILE_PATH=${DUNEPROTOTYPES_DIR}/fcl:${FHICL_FILE_PATH}
export FHICL_FILE_PATH=${PROTODUNEANA_DIR}/job:${FHICL_FILE_PATH}
export FHICL_FILE_PATH=${DUNERECO_DIR}/fcl:${FHICL_FILE_PATH}
export FHICL_FILE_PATH=${INPUT_TAR_DIR_LOCAL}:${FHICL_FILE_PATH}
r
export FW_SEARCH_PATH=${DUNERECO_DIR}/scripts:${FW_SEARCH_PATH}

echo "DUNESW_DIR:         ${DUNESW_DIR}"
echo "PROTODUNEANA_DIR:   ${PROTODUNEANA_DIR}"
echo "DUNERECO_DIR:       ${DUNERECO_DIR}"
echo "DUNEPROTOTYPES_DIR: ${DUNEPROTOTYPES_DIR}"
echo "FHICL_FILE_PATH:    ${FHICL_FILE_PATH}"

# Properly setup custom code with INPUT_TAR_DIR_LOCAL

export OMP_NUM_THREADS=${JUSTIN_PROCESSORS} 

# Construct outFile from input $pfn 
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
outGenFile=pdvd_${KEY}_gen_${now}
outSt1File=pdvd_${KEY}_g4_stage1_${now}
outSt2File=pdvd_${KEY}_g4_stage2_${now}
outDetFile=pdvd_${KEY}_detsim_${now}
outRecFile=pdvd_${KEY}_reco_${now}

campaign="justIN.r${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"

(
# Do the scary preload stuff in a subshell!
lar -c $FCL_GEN_FILE $events_option -T ${outGenFile}_hist.root -o ${outGenFile}.root                    > ${outGenFile}.log 2>&1
lar -c $FCL_ST1_FILE $events_option -T ${outSt1File}_hist.root -o ${outSt1File}.root ${outGenFile}.root > ${outSt1File}.log 2>&1
lar -c $FCL_ST2_FILE $events_option -T ${outSt2File}_hist.root -o ${outSt2File}.root ${outSt1File}.root > ${outSt2File}.log 2>&1
lar -c $FCL_DET_FILE $events_option -T ${outDetFile}_hist.root -o ${outDetFile}.root ${outSt2File}.root > ${outDetFile}.log 2>&1
lar -c $FCL_REC_FILE $events_option -T ${outRecFile}_hist.root -o ${outRecFile}.root ${outDetFile}.root > ${outRecFile}.log 2>&1
)

# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"
echo "$pfn" > justin-processed-pfns.txt

ls -lRS

# Create compressed tar file with all log files 
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
#exit $jobscriptExit
exit $larExit