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Workflow 3515, Stage 1

Priority50
Processors1
Wall seconds18000
RSS bytes4193255424 (3999 MiB)
Max distance for inputs30.0
Enabled input RSEs CERN_PDUNE_EOS, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MANCHESTER, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs CERN_PDUNE_EOS, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_GLASGOW, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MANCHESTER, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_RAL-Tier1, UK_Sheffield, US_BNL, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scopehd-protodune-det-reco
Events for this stage

Output patterns

 DestinationPatternLifetimeFor next stage
1Rucio hd-protodune-det-reco:hd-protodune_reconstruction_keepup_20240926_set1_v09_91_02d01_v0_3515*keepup.root7776000False
2Rucio hd-protodune-det-reco:hd-protodune_reconstruction_keepup_ntuples_20240926_set1_v09_91_02d01_v0_3515*hists.root7776000False

Environment variables

NameValue
METADATA_DIR/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/71f643ddd59465043e3cd3712a1e24b9cd0fa631

Condor Class Ads

NameValue
HAS_CVMFS_dune_osgstorage_orgtrue

File states

Total filesFindingUnallocatedAllocatedOutputtingProcessedNot foundFailed
5489000052610228

Job states

TotalSubmittedStartedProcessingOutputtingFinishedNotusedAbortedStalledJobscript errorOutputting failedNone processed
104080000560805440942791345
Files processed00100100200200300300400400500500600600700700800800900900Sep-26 18:00Sep-26 20:00Sep-26 22:00Sep-27 00:00Sep-27 02:00Sep-27 04:00Sep-27 06:00Sep-27 08:00Sep-27 10:00Sep-27 12:00Sep-27 14:00Sep-27 16:00Sep-27 18:00Sep-27 20:00Sep-27 22:00Files processedBin start timesNumber per binUS_UChicagoUS_FNAL-FermiG…US_FNAL-FermiGridUS_UCSDUS_BNLCA_SFUUS_WisconsinUS_UConn-HPCUS_FNAL-T1
Replicas per RSE5489490.025244.55489269.975244.50000000000003Replicas per RSEDUNE_US_BNL_SDCC (50%)FNAL_DCACHE (50%)

RSEs used

NameInputsOutputs
DUNE_US_BNL_SDCC9872123
DUNE_US_FNAL_DISK_STAGE010325
DUNE_CERN_EOS016

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

SiteAllocatedOutputting
US_UCSD1973
US_FNAL-FermiGrid6328
US_Colorado100
US_NotreDame70
US_UConn-HPC61
US_UChicago47
US_BNL26
CA_SFU10

Jobscript

#!/bin/bash
#

source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune

if [ -n "${DUNESW_DIR}" ]; then
  stat ${DUNESW_DIR}
  if [ $? -ne 0 ]; then
    echo "failed to stat dunesw dir"
    exit 1
  fi

  export PRODUCTS=$DUNESW_DIR:$PRODUCTS
fi

if [ -n "${LARRECO_DIR}" ]; then
  stat ${LARRECO_DIR}
  if [ $? -ne 0 ]; then
    echo "failed to stat larreco dir"
    exit 1
  fi

  export PRODUCTS=$LARRECO_DIR:$PRODUCTS
fi


if [ -n "${DUNEPROTOTYPES_DIR}" ]; then
  stat ${DUNEPROTOTYPES_DIR}
  if [ $? -ne 0 ]; then
    echo "failed to stat dunedetdataformats dir"
    exit 1
  fi

  export PRODUCTS=$DUNEPROTOTYPES_DIR:$PRODUCTS
fi

echo "PRODUCTS $PRODUCTS"

#Setup recent lar software suite
DUNE_VERSION=${DUNE_VERSION:-v09_91_02d01}
setup dunesw \
   "${DUNE_VERSION}" \
   -q "${DUNE_QUALIFIER:-e26:prof}"

if [ $? -ne 0 ]; then
  echo "Failed to setup dunesw $DUNE_VERSION $DUNE_QUALIFIER"
  exit 1
fi

if [ -n "${USE_INPUT_FCL}" ]; then
  
  if [ -z ${INPUT_DIR} ]; then
    echo "Error, INPUT_DIR is undefined but user requested USE_INPUT_FCL"
    exit 1
  fi

  stat ${INPUT_DIR}
  if [ $? -ne 0 ]; then
    echo "Failed to stat input dir. Exiting safely"
    exit 0
  fi

  FHICL_FILE_PATH=${INPUT_DIR}:${FHICL_FILE_PATH}
  echo "FCL PATH: $FHICL_FILE_PATH"
fi

if [ -n "${METADATA_DIR}" ]; then
  stat ${METADATA_DIR}
  if [ $? -ne 0 ]; then
    echo "failed to stat metadata dir"
  fi

  echo "metadata dir contents:"
  ls $METADATA_DIR
  PYTHONPATH=${METADATA_DIR}:$PYTHONPATH
fi

FCL1=${FCL1:-"standard_reco_stage1_protodunehd_keepup.fcl"}
echo "FCL1 dump:" ${FCL1}
fhicl-dump ${FCL1}
if [ $? -ne 0 ]; then
  echo "fhicl-dump ${FCL1} failed"
  exit 1
fi

FCL2=${FCL2:-"standard_reco_stage2_calibration_protodunehd_keepup.fcl"}
echo "FCL2 dump:" ${FCL2}
fhicl-dump ${FCL2}
if [ $? -ne 0 ]; then
  echo "fhicl-dump ${FCL2} failed"
  exit 1
fi


echo "DUNESW loc:"
ups active | grep dunesw

if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

echo "printing env"
env

echo "Will use justin-get-file"
#
DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
##Check that any file was returned
if [ "${DID_PFN_RSE}" == "" ] ; then
  echo "Could not get file"
  exit 0
fi

pfn=`echo ${DID_PFN_RSE} | cut -f2 -d' '`
did=`echo ${DID_PFN_RSE} | cut -f1 -d' '`
echo "pfn: ${pfn}"
echo "did: ${did}"
now=$(date -u +"%Y%m%dT%H%M%SZ")

nevents=${NEVENTS:--1}

extra_line=""
if [ -n "${SKIPFCL2}" ]; then
  jobsub_id=`echo ${JUSTIN_JOBSUB_ID:-1.1@1} | cut -f1 -d'@' | sed -e"s/\./_/"`
  extra_line="-T pdhd_${jobsub_id}_${JUSTIN_WORKFLOW_ID}_${now}_decoder.root"
fi
echo "Running reco stage1"
touch reco.log
starttime=`date +"%s"`.0
LD_PRELOAD=$XROOTD_LIB/libXrdPosixPreload.so lar \
    -c ${FCL1} \
    -n ${nevents} \
    ${extra_line} ${pfn} #>reco.log 2>&1
larExit=$?
endtime=`date +"%s"`.0

if [ $larExit -ne 0 ]; then
  echo "Error in reco1"
  cat reco.log
  exit $larExit
fi

if [ -n "${SKIPFCL2}" ]; then
  echo "$pfn" > justin-processed-pfns.txt
  exit 0
fi

output_stage1_file=`ls *stage1.root`

starttime=`date +"%s"`.0
lar -c ${FCL2} \
    $output_stage1_file #>reco.log 2>&1
larExit=$?
endtime=`date +"%s"`.0

if [ $larExit -ne 0 ]; then
  echo "Error in reco2"
  cat reco.log
  exit $larExit
fi



output_reco_file=`ls *keepup.root`
output_mr_file=`ls *keepup_hists.root`

new_mr_file=`echo $output_reco_file | sed -e "s/keepup/keepup_hists/"`
mv $output_mr_file $new_mr_file
output_mr_file=$new_mr_file

echo "Output files:"
echo "\tReco: ${output_reco_file}"
echo "\tHists: ${output_mr_file}"

echo "Forming reco metadata"
python -m meta_maker --start_time $starttime --end_time $endtime --file_format "artroot" \
                     --app_family "dunesw" --app_name "reco" --app_version ${DUNE_VERSION} \
                     --data_tier "full-reconstructed" --get_events -p "$did" \
                     --campaign "hd-protodune-reco-keepup-v0" \
                     --fcl $FCL2 \
                     --past_fcls $FCL1 --past_apps "reco1" \
                     -f "${JUSTIN_SCOPE}:$output_reco_file" -j "${output_reco_file}.json"
if [ $? -ne 0 ]; then
  echo "Error in reco metadata"
  exit 1
fi
echo "Ran successfully"
## TODO -- CHECK
cat ${output_reco_file}.json

echo "Forming hist metadata"
python -m meta_maker --start_time $starttime --end_time $endtime --file_format "root" \
                     --app_family "dunesw" --app_name "reco" --app_version ${DUNE_VERSION} \
                     --data_tier "root-tuple-virtual" -p "$did" \
                     --campaign "hd-protodune-reco-keepup-v0" \
                     --fcl $FCL2 \
                     --past_fcls $FCL1 --past_apps "reco1" \
                     -f "${JUSTIN_SCOPE}:$output_mr_file" -j "${output_mr_file}.json"
 #--parent_as_json \
if [ $? -ne 0 ]; then
  echo "Error in hist metadata"
  exit 1
fi
echo "formed"
cat ${output_mr_file}.json



echo "$pfn" > justin-processed-pfns.txt
justIN time: 2024-09-29 09:21:55 UTC       justIN version: 01.01.08