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Workflow 2838, Stage 1

Priority50
Processors1
Wall seconds18000
RSS bytes4193255424 (3999 MiB)
Max distance for inputs30.0
Enabled input RSEs CERN_PDUNE_EOS, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MANCHESTER, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs CERN_PDUNE_EOS, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_LANCASTER_CEPH, DUNE_UK_MANCHESTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MANCHESTER, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites BR_CBPF, CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_RAL-Tier1, UK_Sheffield, US_BNL, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scopehd-protodune-det-reco
Events for this stage

Output patterns

 DestinationPatternLifetimeFor next stage
1Rucio hd-protodune-det-reco:hd-protodune_reconstruction_keepup_20240815_set0_v09_91_02d01_v0_2838*keepup.root7776000False
2Rucio hd-protodune-det-reco:hd-protodune_reconstruction_keepup_ntuples_20240815_set0_v09_91_02d01_v0_2838*hists.root7776000False

Environment variables

NameValue
METADATA_DIR/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/71f643ddd59465043e3cd3712a1e24b9cd0fa631

Condor Class Ads

NameValue
HAS_CVMFS_dune_osgstorage_orgtrue

File states

Total filesFindingUnallocatedAllocatedOutputtingProcessedNot foundFailed
412200004109103

Job states

TotalSubmittedStartedProcessingOutputtingFinishedNotusedAbortedStalledJobscript errorOutputting failedNone processed
524700004392011666913057
Files processed00100100200200300300400400500500600600700700Aug-15 04:00Aug-15 07:00Aug-15 10:00Aug-15 13:00Aug-15 16:00Aug-15 19:00Aug-15 22:00Aug-16 01:00Aug-16 04:00Aug-16 07:00Aug-16 10:00Aug-16 13:00Aug-16 16:00Aug-16 19:00Aug-16 22:00Aug-17 01:00Aug-17 04:00Files processedBin start timesNumber per binCERNUK_SheffieldNL_SURFsaraUK_BrunelIT_CNAFFR_CCIN2P3ES_PICCZ_FZUNL_NIKHEFUK_RAL-Tier1UK_ManchesterUK_LiverpoolUK_LancasterUK_Durham
Replicas per RSE4112489.8304968175749251.039311416706823812270.1695031824251237.96068858329315Replicas per RSEDUNE_CERN_EOS (51%)FNAL_DCACHE (48%)

RSEs used

NameInputsOutputs
DUNE_CERN_EOS44740
SURFSARA02984
RAL-PP02619
DUNE_ES_PIC02024
PRAGUE0260
DUNE_FR_CCIN2P3_DISK0132
RAL_ECHO0120
NIKHEF079

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

SiteAllocatedOutputting
UK_Brunel1870
CERN2912
UK_Manchester2214
UK_Sheffield202
NL_NIKHEF121
ES_PIC123
CZ_FZU83
IT_CNAF62
NL_SURFsara33
FR_CCIN2P331
UK_RAL-Tier131
UK_Liverpool21

Jobscript

#!/bin/bash
#

source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune

if [ -n "${DUNESW_DIR}" ]; then
  stat ${DUNESW_DIR}
  if [ $? -ne 0 ]; then
    echo "failed to stat dunesw dir"
    exit 1
  fi

  export PRODUCTS=$DUNESW_DIR:$PRODUCTS
fi

if [ -n "${LARRECO_DIR}" ]; then
  stat ${LARRECO_DIR}
  if [ $? -ne 0 ]; then
    echo "failed to stat larreco dir"
    exit 1
  fi

  export PRODUCTS=$LARRECO_DIR:$PRODUCTS
fi


if [ -n "${DUNEPROTOTYPES_DIR}" ]; then
  stat ${DUNEPROTOTYPES_DIR}
  if [ $? -ne 0 ]; then
    echo "failed to stat dunedetdataformats dir"
    exit 1
  fi

  export PRODUCTS=$DUNEPROTOTYPES_DIR:$PRODUCTS
fi

echo "PRODUCTS $PRODUCTS"

#Setup recent lar software suite
DUNE_VERSION=${DUNE_VERSION:-v09_91_02d01}
setup dunesw \
   "${DUNE_VERSION}" \
   -q "${DUNE_QUALIFIER:-e26:prof}"

if [ $? -ne 0 ]; then
  echo "Failed to setup dunesw $DUNE_VERSION $DUNE_QUALIFIER"
  exit 1
fi

if [ -n "${USE_INPUT_FCL}" ]; then
  
  if [ -z ${INPUT_DIR} ]; then
    echo "Error, INPUT_DIR is undefined but user requested USE_INPUT_FCL"
    exit 1
  fi

  stat ${INPUT_DIR}
  if [ $? -ne 0 ]; then
    echo "Failed to stat input dir. Exiting safely"
    exit 0
  fi

  FHICL_FILE_PATH=${INPUT_DIR}:${FHICL_FILE_PATH}
  echo "FCL PATH: $FHICL_FILE_PATH"
fi

if [ -n "${METADATA_DIR}" ]; then
  stat ${METADATA_DIR}
  if [ $? -ne 0 ]; then
    echo "failed to stat metadata dir"
  fi

  echo "metadata dir contents:"
  ls $METADATA_DIR
  PYTHONPATH=${METADATA_DIR}:$PYTHONPATH
fi

FCL1=${FCL1:-"standard_reco_stage1_protodunehd_keepup.fcl"}
echo "FCL1 dump:" ${FCL1}
fhicl-dump ${FCL1}
if [ $? -ne 0 ]; then
  echo "fhicl-dump ${FCL1} failed"
  exit 1
fi

FCL2=${FCL2:-"standard_reco_stage2_calibration_protodunehd_keepup.fcl"}
echo "FCL2 dump:" ${FCL2}
fhicl-dump ${FCL2}
if [ $? -ne 0 ]; then
  echo "fhicl-dump ${FCL2} failed"
  exit 1
fi


echo "DUNESW loc:"
ups active | grep dunesw

if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

echo "printing env"
env

echo "Will use justin-get-file"
#
DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
##Check that any file was returned
if [ "${DID_PFN_RSE}" == "" ] ; then
  echo "Could not get file"
  exit 0
fi

pfn=`echo ${DID_PFN_RSE} | cut -f2 -d' '`
did=`echo ${DID_PFN_RSE} | cut -f1 -d' '`
echo "pfn: ${pfn}"
echo "did: ${did}"
now=$(date -u +"%Y%m%dT%H%M%SZ")

nevents=${NEVENTS:--1}

extra_line=""
if [ -n "${SKIPFCL2}" ]; then
  jobsub_id=`echo ${JUSTIN_JOBSUB_ID:-1.1@1} | cut -f1 -d'@' | sed -e"s/\./_/"`
  extra_line="-T pdhd_${jobsub_id}_${JUSTIN_WORKFLOW_ID}_${now}_decoder.root"
fi
echo "Running reco stage1"
touch reco.log
starttime=`date +"%s"`.0
LD_PRELOAD=$XROOTD_LIB/libXrdPosixPreload.so lar \
    -c ${FCL1} \
    -n ${nevents} \
    ${extra_line} ${pfn} #>reco.log 2>&1
larExit=$?
endtime=`date +"%s"`.0

if [ $larExit -ne 0 ]; then
  echo "Error in reco1"
  cat reco.log
  exit $larExit
fi

if [ -n "${SKIPFCL2}" ]; then
  echo "$pfn" > justin-processed-pfns.txt
  exit 0
fi

output_stage1_file=`ls *stage1.root`

starttime=`date +"%s"`.0
lar -c ${FCL2} \
    $output_stage1_file #>reco.log 2>&1
larExit=$?
endtime=`date +"%s"`.0

if [ $larExit -ne 0 ]; then
  echo "Error in reco2"
  cat reco.log
  exit $larExit
fi



output_reco_file=`ls *keepup.root`
output_mr_file=`ls *keepup_hists.root`

new_mr_file=`echo $output_reco_file | sed -e "s/keepup/keepup_hists/"`
mv $output_mr_file $new_mr_file
output_mr_file=$new_mr_file

echo "Output files:"
echo "\tReco: ${output_reco_file}"
echo "\tHists: ${output_mr_file}"

echo "Forming reco metadata"
python -m meta_maker --start_time $starttime --end_time $endtime --file_format "artroot" \
                     --app_family "dunesw" --app_name "reco" --app_version ${DUNE_VERSION} \
                     --data_tier "full-reconstructed" --get_events -p "$did" \
                     --campaign "hd-protodune-reco-keepup-v0" \
                     --fcl $FCL2 \
                     --past_fcls $FCL1 --past_apps "reco1" \
                     -f "${JUSTIN_SCOPE}:$output_reco_file" -j "${output_reco_file}.json"
if [ $? -ne 0 ]; then
  echo "Error in reco metadata"
  exit 1
fi
echo "Ran successfully"
## TODO -- CHECK
cat ${output_reco_file}.json

echo "Forming hist metadata"
python -m meta_maker --start_time $starttime --end_time $endtime --file_format "root" \
                     --app_family "dunesw" --app_name "reco" --app_version ${DUNE_VERSION} \
                     --data_tier "root-tuple-virtual" -p "$did" \
                     --campaign "hd-protodune-reco-keepup-v0" \
                     --fcl $FCL2 \
                     --past_fcls $FCL1 --past_apps "reco1" \
                     -f "${JUSTIN_SCOPE}:$output_mr_file" -j "${output_mr_file}.json"
 #--parent_as_json \
if [ $? -ne 0 ]; then
  echo "Error in hist metadata"
  exit 1
fi
echo "formed"
cat ${output_mr_file}.json



echo "$pfn" > justin-processed-pfns.txt
justIN time: 2024-11-17 06:08:40 UTC       justIN version: 01.01.09