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Workflow 2359, Stage 1

Priority50
Processors1
Wall seconds80000
RSS bytes4193255424 (3999 MiB)
Max distance for inputs30.0
Enabled input RSEs CERN_PDUNE_EOS, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_LANCASTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MANCHESTER, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs CERN_PDUNE_EOS, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_LANCASTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MANCHESTER, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-Tier1, UK_Sheffield, US_BNL, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scopeusertests
Events for this stage

Output patterns

 DestinationPatternLifetimeFor next stage
1https://fndcadoor.fnal.gov:2880/dune/scratch/users/calcuttj/justin/keepup_beam_test/test_27307/02359/1*keepup.root

Environment variables

NameValue
DETFORMATS_DIR/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/e92fa537c60f1d9bed1dc1bfc9d1dbcbaaf1058e
DUNERECO_DIR/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/f28ab8ca1930acc87215b374fda73fb68e9d4c2f
DUNESW_DIR/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/8b9e6f7e541cea139674057d6cd873b9e996cb3e
LARPANDORA_DIR/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/13393f7cbb4ae8cb7c81f11f69eea564df142a09
NEVENTS-1

File states

Total filesFindingUnallocatedAllocatedOutputtingProcessedNot foundFailed
5000004901

Job states

TotalSubmittedStartedProcessingOutputtingFinishedNotusedAbortedStalledJobscript errorOutputting failedNone processed
1280000960027230
Files processed00224466881010121214141616Jun-19 16:00Jun-19 19:00Jun-19 22:00Jun-20 01:00Jun-20 04:00Jun-20 07:00Jun-20 10:00Jun-20 13:00Jun-20 16:00Jun-20 19:00Jun-20 22:00Jun-21 01:00Jun-21 04:00Jun-21 07:00Jun-21 10:00Jun-21 13:00Jun-21 16:00Jun-21 19:00Files processedBin start timesNumber per binCERNIT_CNAFUK_SheffieldNL_NIKHEFUK_ImperialUK_BrunelUK_DurhamFR_CCIN2P3UK_Manchester
Replicas per RSE50489.89518802473697249.8430584881421347270.10481197526303239.1569415118579Replicas per RSEDUNE_CERN_EOS (51%)FNAL_DCACHE (48%)

RSEs used

NameInputsOutputs
DUNE_CERN_EOS730

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

SiteAllocatedOutputting
NL_NIKHEF50
NL_SURFsara30
UK_Sheffield20
CERN21
UK_Lancaster10
IT_CNAF12
UK_QMUL10
FR_CCIN2P310
UK_RAL-Tier110
UK_Manchester10

Jobscript

#!/bin/bash
#

source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune

if [ -n "${DUNESW_DIR}" ]; then
  stat ${DUNESW_DIR}
  if [ $? -ne 0 ]; then
    echo "failed to stat dunesw dir"
  fi

  export PRODUCTS=$DUNESW_DIR:$PRODUCTS
fi

if [ -n "${DETFORMATS_DIR}" ]; then
  stat ${DETFORMATS_DIR}
  if [ $? -ne 0 ]; then
    echo "failed to stat dunedetdataformats dir"
    exit 1
  fi

  export PRODUCTS=$DETFORMATS_DIR:$PRODUCTS
fi


if [ -n "${LARPANDORA_DIR}" ]; then
  stat ${LARPANDORA_DIR}
  if [ $? -ne 0 ]; then
    echo "failed to stat larpandora dir"
  fi

  export PRODUCTS=$LARPANDORA_DIR:$PRODUCTS
fi

if [ -n "${DUNERECO_DIR}" ]; then
  stat ${DUNERECO_DIR}
  if [ $? -ne 0 ]; then
    echo "failed to stat dunereco dir"
  fi

  export PRODUCTS=$DUNERECO_DIR:$PRODUCTS
fi


echo "PRODUCTS $PRODUCTS"

#Setup recent lar software suite
DUNE_VERSION=${DUNE_VERSION:-v09_90_02d00}
setup dunesw \
   "${DUNE_VERSION}" \
   -q "${DUNE_QUALIFIER:-e26:prof}"

if [ $? -ne 0 ]; then
  echo "Failed to setup dunesw $DUNE_VERSION $DUNE_QUALIFIER"
  exit 1
fi

if [ -n "${USE_INPUT_FCL}" ]; then
  
  if [ -z ${INPUT_DIR} ]; then
    echo "Error, INPUT_DIR is undefined but user requested USE_INPUT_FCL"
    exit 1
  fi

  stat ${INPUT_DIR}
  if [ $? -ne 0 ]; then
    echo "Failed to stat input dir. Exiting safely"
    exit 0
  fi

  FHICL_FILE_PATH=${INPUT_DIR}:${FHICL_FILE_PATH}
  echo "FCL PATH: $FHICL_FILE_PATH"
fi

if [ -n "${METADATA_DIR}" ]; then
  stat ${METADATA_DIR}
  if [ $? -ne 0 ]; then
    echo "failed to stat metadata dir"
  fi

  echo "metadata dir contents:"
  ls $METADATA_DIR
  PYTHONPATH=${METADATA_DIR}:$PYTHONPATH
fi


FCL=${FCL:-"standard_reco_protodunehd_keepup.fcl"}
echo "FCL dump:"
fhicl-dump ${FCL}

echo "DUNESW loc:"
ups active | grep dunesw

if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

echo "printing env"
env

echo "Will use justin-get-file"
#
DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
##Check that any file was returned
if [ "${DID_PFN_RSE}" == "" ] ; then
  echo "Could not get file"
  exit 0
fi

pfn=`echo ${DID_PFN_RSE} | cut -f2 -d' '`
did=`echo ${DID_PFN_RSE} | cut -f1 -d' '`
echo "pfn: ${pfn}"
echo "did: ${did}"
now=$(date -u +"%Y%m%dT%H%M%SZ")

nevents=${NEVENTS:--1}

echo "Running reco"
touch reco.log
starttime=`date +"%s"`.0
LD_PRELOAD=$XROOTD_LIB/libXrdPosixPreload.so lar \
    -c ${FCL} \
    -n ${nevents} \
    ${pfn} #>reco.log 2>&1
larExit=$?
endtime=`date +"%s"`.0

if [ $larExit -ne 0 ]; then
  echo "Error in reco"
  cat reco.log
  exit $larExit
fi

output_reco_file=`ls *keepup.root`
#output_mr_file=`ls *keepup_hists.root`
#
#echo "Output files:"
#echo "\tReco: ${output_reco_file}"
#echo "\tHists: ${output_mr_file}"
#
#echo "Forming reco metadata"
#python -m meta_maker --start_time $starttime --end_time $endtime --file_format "artroot" \
#                     --app_family "dunesw" --app_name "reco" --app_version ${DUNE_VERSION} \
#                     --data_tier "full-reconstructed" --get_events -p "$did" \
#                     --fcl $FCL \
#                     -f "${JUSTIN_SCOPE}:$output_reco_file" -j "${output_reco_file}.json"
#echo "Ran successfully"
### TODO -- CHECK
#cat ${output_reco_file}.json
#
#echo "Forming hist metadata"
#python -m meta_maker --start_time $starttime --end_time $endtime --file_format "root" \
#                     --app_family "dunesw" --app_name "reco" --app_version ${DUNE_VERSION} \
#                     --data_tier "root-tuple" -p $output_reco_file.json \
#                     --parent_as_json \
#                     --fcl $FCL \
#                     -f "${JUSTIN_SCOPE}:$output_mr_file" -j "${output_mr_file}.json"
#echo "formed"
#cat ${output_mr_file}.json
#
echo "$pfn" > justin-processed-pfns.txt
justIN time: 2024-11-17 05:59:29 UTC       justIN version: 01.01.09