Jobsub ID 245173.1@justin-prod-sched01.dune.hep.ac.uk
| Jobsub ID | 245173.1@justin-prod-sched01.dune.hep.ac.uk |
| Workflow ID | 2869 |
| Stage ID | 1 |
| User name | amoor@fnal.gov |
| HTCondor Group | group_dune |
| Requested | Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 80000 (22 hours) |
| Submitted time | 2024-08-19 23:44:49 |
| Site | US_UChicago |
| Entry | Engage_US_MWT2_uct2_condce_mcore |
| Last heartbeat | 2024-08-20 02:16:15 |
| From worker node | Hostname | uct2-c579.mwt2.org |
| cpuinfo | AMD EPYC 7302 16-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 86400 (24 hours) |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk |
| Started | 2024-08-19 23:46:50 |
| Input files | usertests:000793_reco_data_2024-08-16T_162901Z.root
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Outputting started | |
| Output files | |
| Finished | 2024-08-20 02:16:15 |
| Saved logs | justin-logs:245173.1-justin-prod-sched01.dune.hep.ac.uk.logs.tgz |
| List job events Wrapper job log |
Jobscript log (last 10,000 characters)
AFM g4 jobscript.
Input PFN = root://fndca1.fnal.gov:1094/pnfs/fnal.gov/usr/dune/persistent/staging/usertests/a9/f1/000793_reco_data_2024-08-16T_162901Z.root
Setting up larsoft UPS area... /cvmfs/larsoft.opensciencegrid.org
Setting up DUNE UPS area... /cvmfs/dune.opensciencegrid.org/products/dune/
/cvmfs/larsoft.opensciencegrid.org/products/xrootd/v5_4_3b/Linux64bit+3.10-2.17-e20-p3913-prof/lib/libXrdPosixPreload.so
../justin-jobscript: line 72: 1280 Segmentation fault (core dumped) lar -c $FCL_FILE $events_option -o $outFile "$pfn" > ${fname}_reco_${now}.log 2>&1
=== Start last 100 lines of lar log file ===
Rebuild failed to get the OpDetBTRs. This is expected when running on a generation or simulation step.
%MSG
%MSG-i NuRandomService: larg4Main:largeant@BeginModule 19-Aug-2024 19:04:15 CDT run: 20000031 subRun: 0 event: 335
Random seed for this event, engine 'largeant': 678251670
%MSG
%MSG-i generatePrimaries: larg4Main:largeant@BeginModule 19-Aug-2024 19:04:15 CDT run: 20000031 subRun: 0 event: 335 MCTruthEventAction.cc:112
Generating 1 particles
%MSG
%MSG-i ParticleListActionService: larg4Main:largeant@BeginModule 19-Aug-2024 19:05:59 CDT run: 20000031 subRun: 0 event: 335
Not Stored Process summary:
compt : 1791680
Pair : 78
annihil : 86002
phot : 575211
Brem : 527959
conv : 85924
Ion : 226220
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 19-Aug-2024 19:05:59 CDT run: 20000031 subRun: 0 event: 335 ParticleListAction.cc:701
MCTruth Handles Size: 1
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 19-Aug-2024 19:05:59 CDT run: 20000031 subRun: 0 event: 335 ParticleListAction.cc:708
mclistHandle Size: 1
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 19-Aug-2024 19:05:59 CDT run: 20000031 subRun: 0 event: 335 ParticleListAction.cc:711
Found 1 particles
%MSG
%MSG-i NuRandomService: IonAndScint:IonAndScint@BeginModule 19-Aug-2024 19:05:59 CDT run: 20000031 subRun: 0 event: 335
Random seed for this event, engine 'IonAndScint.ISCalcAlg': 497143033
%MSG
IonAndScint Module Producer
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneUInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneVInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneZInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveOuter
%MSG-i NuRandomService: SimDriftElectrons:elecDrift@BeginModule 19-Aug-2024 19:06:09 CDT run: 20000031 subRun: 0 event: 335
Random seed for this event, engine 'elecDrift': 238155930
%MSG
%MSG-i NuRandomService: PDFastSimPAR:PDFastSim@BeginModule 19-Aug-2024 19:07:14 CDT run: 20000031 subRun: 0 event: 335
Random seed for this event, engine 'PDFastSim.photon': 159279575
%MSG
%MSG-i NuRandomService: PDFastSimPAR:PDFastSim@BeginModule 19-Aug-2024 19:07:14 CDT run: 20000031 subRun: 0 event: 335
Random seed for this event, engine 'PDFastSim.scinttime': 710343838
%MSG
Plugin version SecClnt v5.4.3 is incompatible with secztn v5.6.8 (must be <= 5.4.x) in sec.protocol libXrdSecztn-5.so
IonAndScint endJob.
19-Aug-2024 21:15:44 CDT Closed input file "root://fndca1.fnal.gov:1094/pnfs/fnal.gov/usr/dune/persistent/staging/usertests/a9/f1/000793_reco_data_2024-08-16T_162901Z.root"
================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
================================================================================================================================
Full event 0.00690715 26.142 7811.77 0.23956 426.193 335
--------------------------------------------------------------------------------------------------------------------------------
source:RootInput(read) 5.0995e-05 0.000330895 0.0238489 0.00012278 0.00182438 335
simulate:rns:RandomNumberSaver 1.1882e-05 2.31327e-05 0.00028788 2.0158e-05 1.63163e-05 335
simulate:largeant:larg4Main 0.00611037 0.84276 103.938 0.231788 5.91743 335
simulate:IonAndScint:IonAndScint 7.8798e-05 0.0316916 9.83801 0.000136095 0.536739 335
simulate:elecDrift:SimDriftElectrons 2.8243e-05 0.215026 65.0995 4.7629e-05 3.55188 335
simulate:PDFastSim:PDFastSimPAR 4.0326e-05 25.051 7632.9 6.8128e-05 416.457 335
simulate:muonfilter:LArG4ParticleFilter 9.949e-06 6.17827e-05 0.00292038 1.7593e-05 0.000243274 335
[art]:TriggerResults:TriggerResultInserter 6.402e-06 1.06056e-05 4.3231e-05 1.0079e-05 3.17763e-06 335
end_path:out1:RootOutput 4.168e-06 9.63134e-06 0.000243016 7.975e-06 1.64273e-05 335
end_path:out1:RootOutput(write) 2.285e-06 0.000515733 0.171025 3.166e-06 0.00934384 334
================================================================================================================================
%MSG-i NuRandomService: RootOutput:out1@EndJob 19-Aug-2024 21:15:44 CDT ModuleEndJob
Summary of seeds computed by the NuRandomService
Random policy: 'perEvent'
algorithm version: EventTimestamp_v1
Configured value Last value ModuleLabel.InstanceName
(per event) 497143033 IonAndScint.ISCalcAlg
(per event) 159279575 PDFastSim.photon
(per event) 710343838 PDFastSim.scinttime
(per event) 238155930 elecDrift
(per event) 678251670 largeant
%MSG
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 16445.5 MB
Peak resident set size usage (VmHWM): 13024.2 MB
====================================================================================================
TrigReport ---------- Event summary -------------
TrigReport Events total = 335 passed = 2 failed = 333
TrigReport ---------- Modules in End-path ----------
TrigReport Run Success Error Name
TrigReport 2 2 0 out1
TimeReport ---------- Time summary [sec] -------
TimeReport CPU = 8608.361322 Real = 8849.653003
MemReport ---------- Memory summary [base-10 MB] ------
MemReport VmPeak = 16445.5 VmHWM = 13024.2
=== End last 100 lines of lar log file ===
lar exit code 0
Traceback (most recent call last):
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 434, in <module>
main()
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 373, in main
mddict = expSpecificMetadata.getmetadata()
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 344, in getmetadata
jobt = self.get_job(proc)
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 69, in get_job
raise RuntimeError('sam_metadata_dumper returned nonzero exit status {}.'.format(rc))
RuntimeError: sam_metadata_dumper returned nonzero exit status 1.
extractor_prod.py exit code 1
Error reading metadata from file: Expecting value: line 1 column 1 (char 0)
pdjson2metadata exit code 1
.:
total 81520
-rw-r--r--. 1 dune osgvo 82195603 Aug 19 21:15 RootOutput-d88c-e823-d1ca-cd28.root
-rw-r--r--. 1 dune osgvo 1249585 Aug 19 21:15 000793_reco_data_2024-08-16T_162901Z_reco_2024-08-19T_234657Z.log
-rw-r--r--. 1 dune osgvo 7898 Aug 19 21:15 jobscript.log
-rw-r--r--. 1 dune osgvo 274 Aug 19 18:47 TFileService-13e0-fdc7-7410-5216.root
-rw-r--r--. 1 dune osgvo 104 Aug 19 18:46 all-input-dids.txt
-rw-r--r--. 1 dune osgvo 0 Aug 19 21:15 000793_reco_data_2024-08-16T_162901Z_reco_data_2024-08-19T_234657Z.root.ext.json
-rw-r--r--. 1 dune osgvo 0 Aug 19 21:15 000793_reco_data_2024-08-16T_162901Z_reco_data_2024-08-19T_234657Z.root.json 