Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)
File reset events, by site
Site
Allocated
Outputting
UK_Manchester
0
4
CZ_FZU
0
1
Jobscript
#!/bin/bash
:<<'EOF'
To use this jobscript to process 10 files from the dc4-vd-coldbox-bottom
data and put the output in the usertests namespace (MetaCat) and
scope (Rucio), and in the usertests:output-test-01 dataset in MetaCat and
Rucio, use this command to create the workflow:
justin simple-workflow \
--mql "files from justin-tutorial:justin-tutorial-2024 limit 10" \
--jobscript dc4-vd-coldbox-bottom.jobscript --max-distance 30 --rss-mb 4000 \
--scope usertests --output-pattern '*_reco_data_*.root:output-test-01' \
--lifetime-days 1
The following optional environment variables can be set when creating the
workflow/stage: FCL_FILE, NUM_EVENTS, DUNE_VERSION, DUNE_QUALIFIER
EOF
# fcl file and DUNE software version/qualifier to be used
FCL_FILE=${FCL_FILE:-myreco_beam.fcl}
DUNE_VERSION=${DUNE_VERSION:-v09_91_02d01}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}
HAS_ART_OUTPUT=${HAS_ART_OUTPUT:true}
# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
events_option="-n $NUM_EVENTS"
fi
# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`
if [ "$did_pfn_rse" = "" ] ; then
echo "Nothing to process - exit jobscript"
exit 0
fi
# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"
# Setup DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
# the xroot lib for streaming non-root files is in testproducts,
# so add it to the start of the path
#export PRODUCTS=/cvmfs/dune.opensciencegrid.org/products/dune/testproducts:${PRODUCTS}
export INPUT_TAR_DIR_LOCAL=${CODE_TAR_DIR_LOCAL}
export PRODUCTS="${INPUT_TAR_DIR_LOCAL}/localProducts_larsoft_v09_91_02_e26_prof/:$PRODUCTS"
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
#if [ ! -z "$CODE_TAR_DIR_LOCAL" ]; then
# echo "Using custom sources from $CODE_TAR_DIR_LOCAL"
# source ${CODE_TAR_DIR_LOCAL}/localProducts*/setup
# mrbslp
#fi
# Construct outFile from input $pfn
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`
outFile=${fname}_reco_data_${now}.root
campaign="justIN.w${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"
if [ "$HAS_ART_OUTPUT" = true ];then
OUTPUT_CMD="-o $outFile"
echo "Art output set to $outFile"
else
OUTPUT_CMD="-T ${fname}_ana_${now}.root"
fi
echo "Contents of $INPUT_TAR_DIR_LOCAL:"
ls ${CODE_TAR_DIR_LOCAL}
export FW_SEARCH_PATH=${CODE_TAR_DIR_LOCAL}:$FW_SEARCH_PATH #Necessary for the local path to be searched first for xml files.
#echo "$FW_SEARCH_PATH"
(
# Do the scary preload stuff in a subshell!
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "$LD_PRELOAD"
lar -c $FCL_FILE $events_option $OUTPUT_CMD "$pfn" > ${fname}_reco_${now}.log 2>&1
mv Validation_ccnc.root Validation_ccnc_${fname}.root
)
# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"
echo '=== Start last 100 lines of lar log file ==='
tail -200 ${fname}_reco_${now}.log
echo '=== End last 100 lines of lar log file ==='
if [ $larExit -eq 0 ] ; then
# Success !
echo "$pfn" > justin-processed-pfns.txt
jobscriptExit=0
else
# Oh :(
jobscriptExit=1
fi
ls
ls ${CODE_TAR_DIR_LOCAL}
# Create compressed tar file with all log files
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
exit $jobscriptExit
justIN time: 2024-11-23 07:30:44 UTC justIN version: 01.01.09
