Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)
File reset events, by site
Site
Allocated
Outputting
CERN
0
14
FR_CCIN2P3
0
2
ES_PIC
0
2
UK_Imperial
0
1
Jobscript
#!/bin/bash
:<<'EOF'
To use this jobscript to process 10 files from the dc4-vd-coldbox-bottom
data and put the output in the usertests namespace (MetaCat) and
scope (Rucio), and in the usertests:output-test-01 dataset in MetaCat and
Rucio, use this command to create the workflow:
justin simple-workflow \
--mql \
"files from dune:all where core.run_type='dc4-vd-coldbox-bottom' and dune.campaign='dc4' limit 10" \
--jobscript dc4-vd-coldbox-bottom.jobscript --max-distance 30 --rss-mb 4000 \
--scope usertests --output-pattern '*_reco_data_*.root:output-test-01'
The following optional environment variables can be set when creating the
workflow/stage: FCL_FILE, NUM_EVENTS, DUNE_VERSION, DUNE_QUALIFIER
EOF
# fcl file and DUNE software version/qualifier to be used
FCL_GEN_FILE=gen_protodunevd_${KEY}GeV.fcl
FCL_ST1_FILE=protodunevd_refactored_g4_stage1.fcl
FCL_ST2_FILE=protodunevd_refactored_g4_stage2.fcl
FCL_DET_FILE=protodunevd_refactored_detsim.fcl
FCL_RE1_FILE=protodunevd_std_reco.fcl
FCL_RE2_FILE=protodunevd_mod_reco.fcl
FCL_ANA_FILE=runProtoDUNEelectronWireAna2mcGun.fcl
DUNE_VERSION=${DUNE_VERSION:-v09_91_04d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}
# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
events_option="-n $NUM_EVENTS"
fi
# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`
if [ "$did_pfn_rse" = "" ] ; then
echo "Nothing to process - exit jobscript"
exit 0
fi
# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt
# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"
# Setup DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
export PRODUCTS=$INPUT_TAR_DIR_LOCAL:${PRODUCTS}
echo "PRODUCTS: ${PRODUCTS}"
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
export DUNESW_DIR=${INPUT_TAR_DIR_LOCAL}/dunesw/${DUNE_VERSION}
export DUNESW_FQ_DIR=${DUNESW_DIR}/slf7.x86_64.e26.prof
export DUNESW_LIB=${DUNESW_FQ_DIR}/lib
export PROTODUNEANA_DIR=${INPUT_TAR_DIR_LOCAL}/protoduneana/${DUNE_VERSION}
export PROTODUNEANA_LIB=${PROTODUNEANA_DIR}/include
export PROTODUNEANA_FQ_DIR=${PROTODUNEANA_DIR}/slf7.x86_64.e26.prof
export PROTODUNEANA_LIB=${PROTODUNEANA_FQ_DIR}/lib
export DUNERECO_DIR=${INPUT_TAR_DIR_LOCAL}/dunereco/${DUNE_VERSION}
export DUNERECO_LIB=${DUNERECO_DIR}/include
export DUNERECO_FQ_DIR=${DUNERECO_DIR}/slf7.x86_64.e26.prof
export DUNERECO_LIB=${DUNERECO_FQ_DIR}/lib
export DUNEPROTOTYPES_DIR=${INPUT_TAR_DIR_LOCAL}/duneprototypes/${DUNE_VERSION}
export DUNEPROTOTYPES_INC=${DUNEPROTOTYPES_DIR}/include
export DUNEPROTOTYPES_FQ_DIR=${DUNEPROTOTYPES_DIR}/slf7.x86_64.e26.prof
export DUNEPROTOTYPES_LIB=${DUNEPROTOTYPES_FQ_DIR}/lib
export FHICL_FILE_PATH=${DUNESW_DIR}/fcl:${FHICL_FILE_PATH}
export FHICL_FILE_PATH=${DUNEPROTOTYPES_DIR}/fcl:${FHICL_FILE_PATH}
export FHICL_FILE_PATH=${PROTODUNEANA_DIR}/job:${FHICL_FILE_PATH}
export FHICL_FILE_PATH=${DUNERECO_DIR}/fcl:${FHICL_FILE_PATH}
export FHICL_FILE_PATH=${INPUT_TAR_DIR_LOCAL}:${FHICL_FILE_PATH}
r
export FW_SEARCH_PATH=${DUNERECO_DIR}/scripts:${FW_SEARCH_PATH}
echo "DUNESW_DIR: ${DUNESW_DIR}"
echo "PROTODUNEANA_DIR: ${PROTODUNEANA_DIR}"
echo "DUNERECO_DIR: ${DUNERECO_DIR}"
echo "DUNEPROTOTYPES_DIR: ${DUNEPROTOTYPES_DIR}"
echo "FHICL_FILE_PATH: ${FHICL_FILE_PATH}"
# Properly setup custom code with INPUT_TAR_DIR_LOCAL
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}
# Construct outFile from input $pfn
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
outGenFile=pdvd_${KEY}GeV_gen_${now}
outSt1File=pdvd_${KEY}GeV_g4_stage1_${now}
outSt2File=pdvd_${KEY}GeV_g4_stage2_${now}
outDetFile=pdvd_${KEY}GeV_detsim_${now}
outRe1File=pdvd_${KEY}GeV_std_reco_${now}
outRe2File=pdvd_${KEY}GeV_mod_reco_${now}
outAnaFile=pdvd_${KEY}GeV_ana_${now}
campaign="justIN.r${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"
(
# Do the scary preload stuff in a subshell!
lar -c $FCL_GEN_FILE $events_option -T ${outGenFile}_hist.root -o ${outGenFile}.root > ${outGenFile}.log 2>&1
lar -c $FCL_ST1_FILE $events_option -T ${outSt1File}_hist.root -o ${outSt1File}.root ${outGenFile}.root > ${outSt1File}.log 2>&1
lar -c $FCL_ST2_FILE $events_option -T ${outSt2File}_hist.root -o ${outSt2File}.root ${outSt1File}.root > ${outSt2File}.log 2>&1
lar -c $FCL_DET_FILE $events_option -T ${outDetFile}_hist.root -o ${outDetFile}.root ${outSt2File}.root > ${outDetFile}.log 2>&1
lar -c $FCL_RE1_FILE $events_option -T ${outRe1File}_hist.root -o ${outRe1File}.root ${outDetFile}.root > ${outRe1File}.log 2>&1
lar -c $FCL_RE2_FILE $events_option -T ${outRe2File}_hist.root -o ${outRe2File}.root ${outDetFile}.root > ${outRe2File}.log 2>&1
#lar -c $FCL_ANA_FILE $events_option -T ${outAnaFile}_hist.root -o ${outAnaFile}.root ${outRecFile}.root > ${outAnaFile}.log 2>&1
)
# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"
echo "$pfn" > justin-processed-pfns.txt
ls -lRS
# Create compressed tar file with all log files
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
#exit $jobscriptExit
exit $larExit
justIN time: 2024-11-23 19:30:06 UTC justIN version: 01.01.09
