Workflow 2223, Stage 1

Priority	50
Processors	1
Wall seconds	3600
RSS bytes	2097152000 (2000 MiB)
Max distance for inputs	30.0
Enabled input RSEs	CERN_PDUNE_EOS, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_LANCASTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MANCHESTER, MONTECARLO, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled output RSEs	CERN_PDUNE_EOS, DUNE_CERN_EOS, DUNE_ES_PIC, DUNE_FR_CCIN2P3_DISK, DUNE_IN_TIFR, DUNE_IT_INFN_CNAF, DUNE_UK_LANCASTER_CEPH, DUNE_US_BNL_SDCC, DUNE_US_FNAL_DISK_STAGE, FNAL_DCACHE, FNAL_DCACHE_STAGING, FNAL_DCACHE_TEST, MANCHESTER, NIKHEF, PRAGUE, QMUL, RAL-PP, RAL_ECHO, SURFSARA, T3_US_NERSC
Enabled sites	CA_SFU, CA_Victoria, CERN, CH_UNIBE-LHEP, CZ_FZU, ES_CIEMAT, ES_PIC, FR_CCIN2P3, IN_TIFR, IT_CNAF, NL_NIKHEF, NL_SURFsara, UK_Bristol, UK_Brunel, UK_Durham, UK_Edinburgh, UK_Imperial, UK_Lancaster, UK_Liverpool, UK_Manchester, UK_Oxford, UK_QMUL, UK_RAL-Tier1, UK_Sheffield, US_BNL, US_Caltech, US_Colorado, US_FNAL-FermiGrid, US_FNAL-T1, US_Michigan, US_MIT, US_Nebraska, US_NotreDame, US_PuertoRico, US_SU-ITS, US_Swan, US_UChicago, US_UConn-HPC, US_UCSD, US_Wisconsin
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage
1	https://fndcadoor.fnal.gov:2880/dune/scratch/users/lwhite86/02223/1	Validation_*.root

Environment variables

Name	Value
INPUT_CODE	/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/2a2b4ee1ae096d2fec0e37bc9e9979668549eff9
INPUT_CONFIG	/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/a0025d625688fa333f9433ba71507b3a6a79fb83

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
4000	3999	0	0	0	0	0	1

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
12	0	0	0	0	6	0	0	2	4	0	0

RSEs used

Name	Inputs	Outputs
DUNE_ES_PIC	3	0
DUNE_US_BNL_SDCC	3	0

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
US_PuertoRico	1	0
US_NotreDame	1	0

Jobscript

#!/bin/bash
:<<'EOF'

To use this jobscript to process 10 files from the dc4-vd-coldbox-bottom
data and put the output in the usertests namespace (MetaCat) and 
scope (Rucio), and in the usertests:output-test-01 dataset in MetaCat and
Rucio, use this command to create the workflow:

justin simple-workflow \
--mql \
"files from dune:all where core.run_type='dc4-vd-coldbox-bottom' and dune.campaign='dc4' limit 10" \
--jobscript dc4-vd-coldbox-bottom.jobscript --max-distance 30 --rss-mb 4000 \
--scope usertests --output-pattern '*_reco_data_*.root:output-test-01' 

The following optional environment variables can be set when creating the
workflow/stage: FCL_FILE, NUM_EVENTS, DUNE_VERSION, DUNE_QUALIFIER 

EOF

# fcl file and DUNE software version/qualifier to be used
FCL_FILE=${FCL_FILE:-$INPUT_CONFIG/lhw_pandora_2view_validation_calo_matching.fcl}
DUNE_VERSION=${DUNE_VERSION:-v09_85_00d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}
FW_SEARCH_PATH=$FW_SEARCH_PATH:$INPUT_CONFIG
echo $FW_SEARCH_PATH

# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
 events_option="-n $NUM_EVENTS"
fi

# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`

if [ "$did_pfn_rse" = "" ] ; then
  echo "Nothing to process - exit jobscript"
  exit 0
fi

# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt

# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"

# Setup DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh

# the xroot lib for streaming non-root files is in testproducts, 
# so add it to the start of the path
#export PRODUCTS=/cvmfs/dune.opensciencegrid.org/products/dune/testproducts:${PRODUCTS}

cp -r $INPUT_CODE/larpandora .
cp -r $INPUT_CODE/larpandoracontent .

ls
export PRODUCTS=`pwd`:$PRODUCTS
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
ups active

export OMP_NUM_THREADS=${JUSTIN_PROCESSORS} 

# Construct outFile from input $pfn 
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`
#outFile=${fname}_reco_data_${now}.root

campaign="justIN.r${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"

(
# Do the scary preload stuff in a subshell!
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "$LD_PRELOAD"

#lar -c $FCL_FILE $events_option -o $outFile "$pfn" > ${fname}_reco_${now}.log 2>&1
lar -c $FCL_FILE $events_option "$pfn" > ${fname}_validation_${now}.log 2>&1
)

# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"
echo "$pfn" > justin-processed-pfns.txt
mv Validation.root Validation_${fname}.root

# LEIGH: No ART files so the below isn't needed?
#jobscriptExit=1
#if [ $larExit -eq 0 ] ; then
#  # write metadata file if lar succeeded
#  extractor_prod.py --infile "$outFile" --no_crc --appname reco \
#    --appversion ${DUNE_VERSION} --appfamily art \
#    --campaign ${campaign} > $outFile.ext.json  
#  extractorExit=$?
#  echo "extractor_prod.py exit code $extractorExit"
#
#  # Run pdjson2meta. THIS SHOULD MOVE TO SOMEWHERE LIKE duneutil ?
#  /cvmfs/dune.opensciencegrid.org/products/dune/justin/pro/NULL/jobutils/pdjson2metadata \
#     $outFile.ext.json all-input-dids.txt > $outFile.json
#  p2mExit=$?
#  echo "pdjson2metadata exit code $p2mExit"
#
#  if [ $extractorExit -eq 0 -a $p2mExit -eq 0 ] ; then
#    echo "Metadata extraction succeeds"
#    echo "$pfn" > justin-processed-pfns.txt
#    echo "===Metadata JSON==="
#    cat $outFile.json
#    echo
#    echo "==================="
#    jobscriptExit=0
#  fi
#fi

ls -lS

# Create compressed tar file with all log files 
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
#exit $jobscriptExit
exit $larExit