Workflow 2214, Stage 1

Priority	50
Processors	1
Wall seconds	3600
RSS bytes	4194304000 (4000 MiB)
Max distance for inputs	30.0
Enabled input RSEs
Enabled output RSEs
Enabled sites
Scope	usertests
Events for this stage

Output patterns

	Destination	Pattern	Lifetime	For next stage
0	https://fndcadoor.fnal.gov:2880/dune/scratch/users/lwhite86/02214/1	Validation_*.root

Environment variables

Name	Value
INPUT_CODE	/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/6a7af5bc8d1dfc59e6be2e7a46841172034cf967
INPUT_CONFIG	/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/6fa6a8103f51b9a9e646edca122980cd12c2eeb9

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
4000	0	0	0	0	3973	0	27

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
6236	0	0	0	0	4239	0	101	959	937	0	0

RSEs used

Name	Inputs	Outputs
DUNE_US_FNAL_DISK_STAGE	1284	0
DUNE_ES_PIC	1090	0
SURFSARA	1066	0
QMUL	734	0
RAL_ECHO	287	0
NIKHEF	257	0
RAL-PP	236	0
PRAGUE	167	0
DUNE_FR_CCIN2P3_DISK	94	0
DUNE_US_BNL_SDCC	73	0

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
NL_NIKHEF	84	6
US_FNAL-FermiGrid	37	0
US_NotreDame	23	0
CZ_FZU	22	0
CERN	21	0
UK_Manchester	15	1
NL_SURFsara	15	1
US_UChicago	12	0
UK_Imperial	10	1
US_Colorado	9	0
UK_Lancaster	8	0
UK_RAL-Tier1	7	84
IT_CNAF	5	0
UK_Oxford	3	0
UK_Brunel	3	1
CA_SFU	3	0
CA_Victoria	2	0
ES_PIC	0	2
US_FNAL-T1	0	1

Jobscript

#!/bin/bash
:<<'EOF'

To use this jobscript to process 10 files from the dc4-vd-coldbox-bottom
data and put the output in the usertests namespace (MetaCat) and 
scope (Rucio), and in the usertests:output-test-01 dataset in MetaCat and
Rucio, use this command to create the workflow:

justin simple-workflow \
--mql \
"files from dune:all where core.run_type='dc4-vd-coldbox-bottom' and dune.campaign='dc4' limit 10" \
--jobscript dc4-vd-coldbox-bottom.jobscript --max-distance 30 --rss-mb 4000 \
--scope usertests --output-pattern '*_reco_data_*.root:output-test-01' 

The following optional environment variables can be set when creating the
workflow/stage: FCL_FILE, NUM_EVENTS, DUNE_VERSION, DUNE_QUALIFIER 

EOF

# fcl file and DUNE software version/qualifier to be used
FCL_FILE=${FCL_FILE:-$INPUT_CONFIG/lhw_pandora_2view_validation.fcl}
DUNE_VERSION=${DUNE_VERSION:-v09_85_00d00}
DUNE_QUALIFIER=${DUNE_QUALIFIER:-e26:prof}
FW_SEARCH_PATH=$FW_SEARCH_PATH:$INPUT_CONFIG
echo $FW_SEARCH_PATH

# number of events to process from the input file
if [ "$NUM_EVENTS" != "" ] ; then
 events_option="-n $NUM_EVENTS"
fi

# First get an unprocessed file from this stage
did_pfn_rse=`$JUSTIN_PATH/justin-get-file`

if [ "$did_pfn_rse" = "" ] ; then
  echo "Nothing to process - exit jobscript"
  exit 0
fi

# Keep a record of all input DIDs, for pdjson2meta file -> DID mapping
echo "$did_pfn_rse" | cut -f1 -d' ' >>all-input-dids.txt

# pfn is also needed when creating justin-processed-pfns.txt
pfn=`echo $did_pfn_rse | cut -f2 -d' '`
echo "Input PFN = $pfn"

# Setup DUNE environment
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh

# the xroot lib for streaming non-root files is in testproducts, 
# so add it to the start of the path
#export PRODUCTS=/cvmfs/dune.opensciencegrid.org/products/dune/testproducts:${PRODUCTS}

cp -r $INPUT_CODE/larpandora .
ls
export PRODUCTS=`pwd`:$PRODUCTS
setup dunesw "$DUNE_VERSION" -q "$DUNE_QUALIFIER"
ups active

export OMP_NUM_THREADS=${JUSTIN_PROCESSORS} 

# Construct outFile from input $pfn 
now=$(date -u +"%Y-%m-%dT_%H%M%SZ")
Ffname=`echo $pfn | awk -F/ '{print $NF}'`
fname=`echo $Ffname | awk -F. '{print $1}'`
#outFile=${fname}_reco_data_${now}.root

campaign="justIN.r${JUSTIN_WORKFLOW_ID}s${JUSTIN_STAGE_ID}"

(
# Do the scary preload stuff in a subshell!
export LD_PRELOAD=${XROOTD_LIB}/libXrdPosixPreload.so
echo "$LD_PRELOAD"

#lar -c $FCL_FILE $events_option -o $outFile "$pfn" > ${fname}_reco_${now}.log 2>&1
lar -c $FCL_FILE $events_option "$pfn" > ${fname}_validation_${now}.log 2>&1
)

# Subshell exits with exit code of last command
larExit=$?
echo "lar exit code $larExit"
echo "$pfn" > justin-processed-pfns.txt
mv Validation.root Validation_${fname}.root

# LEIGH: No ART files so the below isn't needed?
#jobscriptExit=1
#if [ $larExit -eq 0 ] ; then
#  # write metadata file if lar succeeded
#  extractor_prod.py --infile "$outFile" --no_crc --appname reco \
#    --appversion ${DUNE_VERSION} --appfamily art \
#    --campaign ${campaign} > $outFile.ext.json  
#  extractorExit=$?
#  echo "extractor_prod.py exit code $extractorExit"
#
#  # Run pdjson2meta. THIS SHOULD MOVE TO SOMEWHERE LIKE duneutil ?
#  /cvmfs/dune.opensciencegrid.org/products/dune/justin/pro/NULL/jobutils/pdjson2metadata \
#     $outFile.ext.json all-input-dids.txt > $outFile.json
#  p2mExit=$?
#  echo "pdjson2metadata exit code $p2mExit"
#
#  if [ $extractorExit -eq 0 -a $p2mExit -eq 0 ] ; then
#    echo "Metadata extraction succeeds"
#    echo "$pfn" > justin-processed-pfns.txt
#    echo "===Metadata JSON==="
#    cat $outFile.json
#    echo
#    echo "==================="
#    jobscriptExit=0
#  fi
#fi

ls -lS

# Create compressed tar file with all log files 
tar zcf `echo "$JUSTIN_JOBSUB_ID.logs.tgz" | sed 's/@/_/g'` *.log
#exit $jobscriptExit
exit $larExit