Workflow 2176, Stage 1

Priority	50
Processors	1
Wall seconds	80000
RSS bytes	4193255424 (3999 MiB)
Max distance for inputs	100.0
Enabled input RSEs
Enabled output RSEs
Enabled sites
Scope	vd-protodune
Events for this stage

Output patterns

Destination	Pattern	Lifetime	For next stage
Rucio vd-protodune:vd-protodune-gen_g4_stage1_2176	*g4_stage1.root	5184000	False
Rucio vd-protodune:vd-protodune-g4_stage2_2176	*g4_stage2.root	5184000	False
Rucio vd-protodune:vd-protodune-g4_stage3_2176	*g4_stage3.root	5184000	False
Rucio vd-protodune:vd-protodune-detsim_2176	*detsim.root	5184000	False
Rucio vd-protodune:vd-protodune-reco_2176	*reco.root	5184000	False

Environment variables

Name	Value
INPUT_DIR	/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/4896434b5836f4426155a550977fac9f74e803a3

File states

Total files	Finding	Unallocated	Allocated	Outputting	Processed	Not found	Failed
500	0	0	0	0	500	0	0

Job states

Total	Submitted	Started	Processing	Outputting	Finished	Notused	Aborted	Stalled	Jobscript error	Outputting failed	None processed
969	0	0	0	0	784	0	0	167	18	0	0

RSEs used

Name	Inputs	Outputs
MONTECARLO	684	0
NIKHEF	0	900
QMUL	0	550
SURFSARA	0	240
RAL_ECHO	0	195
RAL-PP	0	180
DUNE_CERN_EOS	0	150
DUNE_US_FNAL_DISK_STAGE	0	105
DUNE_US_BNL_SDCC	0	105
DUNE_ES_PIC	0	65
PRAGUE	0	10

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

Site	Allocated	Outputting
UK_Edinburgh	50	0
UK_Manchester	40	0
US_FNAL-T1	30	0
ES_PIC	15	0
CA_Victoria	9	0
UK_Brunel	8	0
US_UCSD	8	0
US_FNAL-FermiGrid	6	0

Jobscript

#!/bin/bash
#
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune

#Setup recent lar software suite
setup dunesw \
   "${DUNE_VERSION:-v09_88_00d00}" \
   -q "${DUNE_QUALIFIER:-e26:prof}"
echo "printing env"


if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

env

echo "Will use justin-get-file"
DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
if [ "${DID_PFN_RSE}" == "" ] ; then
  echo "Could not get file"
  exit 0
fi
pfn=`echo ${DID_PFN_RSE} | cut -f2 -d' '` 

if [ -z ${LINENUMBER} ] ; then
  LINENUMBER=$pfn
fi

# echo "linenumber " $LINENUMBER
ex_code=0
pstep=10
tstep=0

now=$(date -u +"%Y%m%dT%H%M%SZ")
namespace=${JUSTIN_SCOPE:-"usertests"}
  

# Run Generator
echo "generator" 
#prodname="prod_cosmics_protodunevd_${now}_gen_${pfn}"
prodname="prod_cosmics_protodunevd_${now}_${pfn}_gen"
istep=1
tstep=$((tstep+1))
nstep=$(($pstep*$tstep)) 

 lar -c gen_protodunevd_cosmics.fcl -o ${prodname}.root -n 10
 
if [ $? -ne 0 ]; then 
  ex_code=$(($nstep+$istep))
  echo "ERROR: lar (generation) exit code: $ex_code " 
  files=`ls *_${now}_*`
  for f in $files 
    do
      size=`stat -c %s $f`
      echo "written output file: $f $size"
    done 
else
  istep=$((istep+1))

rm -fr all-input-dids.txt
echo "noparents:noparents.root" > all-input-dids.txt

extractor_prod.py --infile ${prodname}.root  --appfamily art --appname gen --appversion  v09_88_00d00  --no_crc --requestid ritm1998918  --input_json ${INPUT_DIR}/pdvd_input_nop.json >    ${prodname}.root.ext.json && sed -i -e 's/stepfcl/gen_protodunevd_cosmics/g' ${prodname}.root.ext.json
 
python ${INPUT_DIR}/pdjson2metadata ${prodname}.root.ext.json all-input-dids.txt usertests > ${prodname}.root.json
 
  
   if [ $? -ne 0 ] ; then 
      ex_code=$((nstep+istep))
      echo "ERROR: metadata extraction (generation) exit code: $ex_code"
      files=`ls *_${now}_*`
      for f in $files 
         do
           size=`stat -c %s $f`
           echo "written output file: $f $size"
       done 
   fi
fi 


echo "=====checking generation MD"

jq . ${prodname}.root.json


  awk '/"core.runs/,/],/ { print;f=1} f&&/],/{ exit}' ${prodname}.root.json > run.json
  awk '/"core.runs_subruns/,/],/ { print;f=1} f&&/],/{ exit}' ${prodname}.root.json >> run.json
  awk 'NR==1 {print; exit}' ${INPUT_DIR}/pdvd_input.json > pdvd_run_input.json
  cat run.json >> pdvd_run_input.json
  tail -n +2 ${INPUT_DIR}/pdvd_input.json  >> pdvd_run_input.json 
#echo "generation exit code " $ex_code   
if [ $ex_code -ne 0 ]; then exit $ex_code ; fi
 
# Stage 1 G4
echo "G4 stage 1" 
g4stage1_name="${prodname}_g4_stage1"
tstep=$((tstep+1))
nstep=$(($pstep*$tstep)) 
istep=1

 lar -c protodunevd_refactored_g4_stage1.fcl ${prodname}.root -o ${g4stage1_name}.root

if [ $? -ne 0 ]; then
  ex_code=$((nstep+istep))
  echo "ERROR: lar (geant step1) exit code: $ex_code"
  files=`ls *_${now}_*`
    for f in $files 
       do
         size=`stat -c %s $f`
         echo "written output file: $f $size"
       done 
else
 istep=$((istep+1))

rm -fr all-input-dids.txt
echo "noparents:noparents.root" > all-input-dids.txt


extractor_prod.py --infile ${g4stage1_name}.root --appfamily art --appname g4-stage1 --appversion  v09_88_00d00  --no_crc --requestid ritm1998918  --input_json pdvd_run_input.json > ${g4stage1_name}.root.ext.json && sed -i -e 's/unknown/mc/g;s/stepfcl/protodunevd_refactored_g4_stage1/g' ${g4stage1_name}.root.ext.json    

python ${INPUT_DIR}/pdjson2metadata ${g4stage1_name}.root.ext.json all-input-dids.txt usertests > ${g4stage1_name}.root.json 

 
  if [ $? -ne 0 ] ;then 
     ex_code=$((nstep+istep))
     echo "ERROR: metadata extraction (geant step1) exit code: $ex_code" 
     files=`ls *_${now}_*`
     for f in $files 
        do
          size=`stat -c %s $f`
          echo "written output file: $f $size"
        done 
    fi	
fi 
 
 
if [ $ex_code -ne 0 ]; then exit $ex_code ; fi

echo "=============checking g4stage1 MD"

jq . ${g4stage1_name}.root.json


# Stage 2 G4  
echo "G4 stage 2"
g4stage2_name="${g4stage1_name}_g4_stage2"
tstep=$((tstep+1))
nstep=$(($pstep*$tstep)) 
istep=1

 lar -c  protodunevd_refactored_g4_stage2_Xe10ppm.fcl ${g4stage1_name}.root -o ${g4stage2_name}.root

if [ $? -ne 0 ]; then
  ex_code=$((nstep+istep))
  echo "ERROR: lar (geant step2) exit code: $ex_code"
  files=`ls *_${now}_*`
    for f in $files 
      do
        size=`stat -c %s $f`
        echo "written output file: $f $size"
      done 
else
istep=$((istep+1))

rm -fr all-input-dids.txt 
echo ${namespace}":"${g4stage1_name}.root > all-input-dids.txt

extractor_prod.py --infile ${g4stage2_name}.root  --appfamily art --appname g4-stage2 --appversion  v09_88_00d00  --no_crc --requestid ritm1998918  --input_json pdvd_run_input.json > ${g4stage2_name}.root.ext.json && sed -i -e's/unknown/mc/g;s/stepfcl/protodunevd_refactored_g4_stage2_Xe10ppm/g' ${g4stage2_name}.root.ext.json 

python ${INPUT_DIR}/pdjson2metadata ${g4stage2_name}.root.ext.json all-input-dids.txt usertests > ${g4stage2_name}.root.json 


    if [ $? -ne 0 ] ;then
       ex_code=$((nstep+istep))
       echo "ERROR: metadata extraction (geant step2) exit code: $ex_code"
       files=`ls *_${now}_*`
        for f in $files 
          do
            size=`stat -c %s $f`
            echo "written output file: $f $size"
          done 
    fi
fi 
if [ $ex_code -ne 0 ]; then exit $ex_code ; fi


echo "========== checking g4stage2 MD"

jq . ${g4stage2_name}.root.json 


# Stage 3 G4  
echo "G4 stage 3"
g4stage3_name="${g4stage2_name}_g4_stage3"
tstep=$((tstep+1))
nstep=$(($pstep*$tstep)) 
istep=1

 lar -c  protodunevd_refactored_g4_stage3_Xe10ppm.fcl ${g4stage2_name}.root -o ${g4stage3_name}.root

if [ $? -ne 0 ]; then
  ex_code=$((nstep+istep))
  echo "ERROR: lar (geant step3) exit code: $ex_code"
  files=`ls *_${now}_*`
    for f in $files 
      do
        size=`stat -c %s $f`
        echo "written output file: $f $size"
      done 
else
istep=$((istep+1))

rm -fr all-input-dids.txt 
echo ${namespace}":"${g4stage2_name}.root > all-input-dids.txt

extractor_prod.py --infile ${g4stage3_name}.root  --appfamily art --appname g4-stage3 --appversion  v09_88_00d00  --no_crc --requestid ritm1998918  --input_json pdvd_run_input.json > ${g4stage3_name}.root.ext.json && sed -i -e's/unknown/mc/g;s/stepfcl/protodunevd_refactored_g4_stage3_Xe10ppm/g' ${g4stage3_name}.root.ext.json 

python ${INPUT_DIR}/pdjson2metadata ${g4stage3_name}.root.ext.json all-input-dids.txt usertests > ${g4stage3_name}.root.json 


    if [ $? -ne 0 ] ;then
       ex_code=$((nstep+istep))
       echo "ERROR: metadata extraction (geant step3) exit code: $ex_code"
       files=`ls *_${now}_*`
        for f in $files 
          do
            size=`stat -c %s $f`
            echo "written output file: $f $size"
          done 
    fi
fi 
if [ $ex_code -ne 0 ]; then exit $ex_code ; fi


echo "========== checking g4stage3 MD"

jq . ${g4stage3_name}.root.json 
 
# Detsim

 
# Detsim
echo "detsim"
detsim_name="${g4stage3_name}_detsim"
tstep=$((tstep+1))
nstep=$(($pstep*$tstep)) 
istep=1

 lar -c protodunevd_refactored_detsim_Xe10ppm.fcl ${g4stage3_name}.root  -o ${detsim_name}.root 

if [ $? -ne 0 ]; then
  ex_code=$((nstep+istep))
  echo "ERROR: lar (detsim) exit code: $ex_code"
  files=`ls *_${now}_*`
    for f in $files 
      do
        size=`stat -c %s $f`
        echo "written output file: $f $size"
      done   
else    
 istep=$((istep+1))    

rm -fr all-input-dids.txt 
echo ${namespace}":"${g4stage3_name}.root > all-input-dids.txt

extractor_prod.py --infile ${detsim_name}.root  --appfamily art --appname detsim --appversion  v09_88_00d00  --no_crc --requestid ritm1998918  --input_json ${INPUT_DIR}/pdvd_input.json > ${detsim_name}.root.ext.json  && sed -i -e 's/stepfcl/protodunevd_refactored_detsim_Xe10ppm/g' ${detsim_name}.root.ext.json
python ${INPUT_DIR}/pdjson2metadata ${detsim_name}.root.ext.json all-input-dids.txt usertests >  ${detsim_name}.root.json
 
    
    if [ $? -ne 0 ] ;then
       ex_code=$((nstep+istep))
       echo "ERROR: metadata extraction (detsim) exit code: $ex_code" 
       files=`ls *_${now}_*` 
         for f in $files 
           do
            size=`stat -c %s $f`
            echo "written output file: $f $size"
          done         
    fi
fi 

if [ $ex_code -ne 0 ]; then exit $ex_code ; fi


echo "============= checking detsim MD "

jq . ${detsim_name}.root.json 
 


# Reco
echo "reco"
reco_name="${detsim_name}_reco"
tstep=$((tstep+1))
nstep=$(($pstep*$tstep)) 
istep=1

 lar -c protodunevd_reco.fcl ${detsim_name}.root -o ${reco_name}.root

if [ $? -ne 0 ]; then
   ex_code=$((nstep+istep))
   echo "ERROR: lar (reco) exit code: $ex_code"
   files=`ls *_${now}_*` 
     for f in $files 
       do
        size=`stat -c %s $f`
        echo "written output file: $f $size"
      done   
else     
 istep=$((istep+1))      
 
rm -fr all-input-dids.txt  
echo ${namespace}":"${detsim_name}.root > all-input-dids.txt 
 
extractor_prod.py --infile ${reco_name}.root  --appfamily art --appname reco --appversion  v09_88_00d00  --no_crc --requestid ritm1998918  --input_json ${INPUT_DIR}/pdvd_input.json > ${reco_name}.root.ext.json  && sed -i -e 's/stepfcl/protodunevd_reco/g' ${reco_name}.root.ext.json   
python ${INPUT_DIR}/pdjson2metadata ${reco_name}.root.ext.json all-input-dids.txt usertests > ${reco_name}.root.json 



   if [ $? -ne 0 ] ;then
       ex_code=$((nstep+istep))
       echo "ERROR: metadata extraction (reco) exit code: $ex_code" 
       files=`ls *_${now}_*` 
         for f in $files 
           do
            size=`stat -c %s $f`
            echo "written output file: $f $size"
          done                 
    fi
fi 
#overrides=""
#python ${INPUT_DIR}/pdhd_meta_writer.py \
#       --json ${INPUT_DIR}/pdhd_base_meta.json \
#       --overrides ${overrides} \
#       --parent ${prodname}.root \
#       -o ${reco_name}.root.ext.json

echo "===========checking reco MD"

jq . ${reco_name}.root.json 
 


if [ $? -ne 0 ]
then
  echo "Exiting with error"
  exit 1
else
  files=`ls *_${now}_*` 
   for f in $files 
      do
       size=`stat -c %s $f`
       echo "written output file: $f $size"
      done  

  echo "$pfn" > justin-processed-pfns.txt
fi