justIN           Dashboard       Workflows       Jobs       AWT       Sites       Storages       Docs       Login

Workflow 1588, Stage 1

Priority50
Processors1
Wall seconds80000
RSS bytes2097152000 (2000 MiB)
Max distance for inputs30.0
Enabled input RSEs
Enabled output RSEs
Enabled sites
Scopefardet-hd
Events for this stage

Output patterns

 DestinationPatternLifetimeFor next stage
0Rucio fardet-hd:fardet-hd-reco2_ritm1780305_anutau_rhc_skip10000_limit5000_1588*reco2.root2592000False
0Rucio fardet-hd:fardet-hd-reco2ana_ritm1780305_anutau_rhc_skip10000_limit5000_1588*reco2_ana.root2592000False

Environment variables

NameValue
CONVERT_DIR/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/075c0e56c49d2ffca32bc443c9c2fcc3efb66d49
DETPRODHD
HCPRODRHC

File states

Total filesFindingUnallocatedAllocatedOutputtingProcessedNot foundFailed
500000004979120

Job states

TotalSubmittedStartedProcessingOutputtingFinishedNotusedAbortedStalledJobscript errorOutputting failedNone processed
8698000064530601480685200
Files processed0010010020020030030040040050050060060070070080080090090010001000110011001200120013001300Feb-19 18:00Feb-19 21:00Feb-20 00:00Feb-20 03:00Feb-20 06:00Feb-20 09:00Feb-20 12:00Feb-20 15:00Feb-20 18:00Feb-20 21:00Feb-21 00:00Feb-21 03:00Feb-21 06:00Feb-21 09:00Feb-21 12:00Feb-21 15:00Feb-21 18:00Feb-21 21:00Feb-22 00:00Files processedBin start timesNumber per binUS_UChicagoUS_WisconsinUS_FNAL-FermiG…US_FNAL-FermiGridUS_ColoradoUK_RAL-PPDCERNCA_VictoriaES_PICES_CIEMATUK_ImperialUK_SheffieldUS_BNLCZ_FZUUK_OxfordNL_NIKHEFUK_RAL-Tier1UK_EdinburghUK_ManchesterUS_UCSDUK_LiverpoolUK_QMULUK_BristolUK_BrunelIT_CNAFUS_SU-ITSUS_PuertoRicoCH_UNIBE-LHEPCA_SFUUS_NotreDameUS_FNAL-T1NL_SURFsara
Replicas per RSE4999490.025244.54999269.975244.50000000000003Replicas per RSEDUNE_ES_PIC (50%)DUNE_US_FNAL_DISK_STAGE (50%)

RSEs used

NameInputsOutputs
DUNE_ES_PIC4435300
DUNE_US_FNAL_DISK_STAGE28792511
RAL_ECHO02149
DUNE_US_BNL_SDCC02034
DUNE_CERN_EOS01122
RAL-PP0930
NIKHEF0873
PRAGUE0476
DUNE_UK_LANCASTER_CEPH0439
MANCHESTER0114
QMUL060
SURFSARA040
DUNE_FR_CCIN2P3_DISK027

Stats of processed input files as CSV or JSON, and of uploaded output files as CSV or JSON (up to 10000 files included)

File reset events, by site

SiteAllocatedOutputting
UK_RAL-Tier124847
CERN17523
NL_NIKHEF12710
US_UChicago8313
UK_RAL-PPD837
US_FNAL-FermiGrid8116
US_SU-ITS8115
UK_Manchester7114
UK_Sheffield566
CZ_FZU558
UK_QMUL545
US_Colorado5414
UK_Oxford519
IT_CNAF456
US_PuertoRico432
US_BNL3714
US_Wisconsin328
UK_Edinburgh320
ES_PIC301
ES_CIEMAT261
UK_Imperial211
UK_Bristol212
UK_Brunel162
CA_Victoria123
CH_UNIBE-LHEP121
US_UCSD30
CA_SFU20

Jobscript

#!/bin/bash
#
source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh
setup metacat
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune


##TODO -- write usage



DETECTOR="${DETPROD:-HD}"
HC="${HCPROD:-FHC}"

## Build up the fcls to use
if [ "${DETECTOR}" = "HD" ]; then
  ANAFCL="standard_ana_dune10kt_1x2x6.fcl"
  MDDETTYPE="fardet-hd"

  if [ "$HC" = "FHC" ]; then
    RECOFCL="standard_reco2_dune10kt_nu_1x2x6.fcl"
  elif [ "$HC" = "RHC" ]; then
    RECOFCL="standard_reco2_dune10kt_anu_1x2x6.fcl"
  fi

elif [ "${DETECTOR}" = "VD" ]; then
  ANAFCL="anatree_dunevd10kt_1x8x6_3view_30deg_geov3.fcl"
  MDDETTYPE="fardet-vd"

  if [ "$HC" = "FHC" ]; then
    RECOFCL="reco2_dunevd10kt_nu_1x8x6_3view_30deg_geov3.fcl"
  elif [ "$HC" = "RHC" ]; then
    RECOFCL="reco2_dunevd10kt_anu_1x8x6_3view_30deg_geov3.fcl"
  fi

elif [ "${DETECTOR}" = "TEST" ]; then
  RECOFCL="${INPUT_TAR_DIR_LOCAL}/test.fcl"

elif [ "${DETECTOR}" = "TEST2" ]; then
  RECOFCL="${INPUT_TAR_DIR_LOCAL}/test2.fcl"

else
  echo "NEED TO REQUEST EITHER HD OR VD. USER REQUESTED ${DETECTOR}"
  exit 1
fi

echo "Using Reco fcl: ${RECOFCL}"
echo "and Ana fcl: ${ANAFCL}"


#Setup recent lar software suite
setup dunesw \
   "${DUNE_VERSION:-v09_81_00d02}" \
   -q "${DUNE_QUALIFIER:-e26:prof}"
echo "printing env"
env


##Force certain env vars to force good behavior
#export TF_NUM_THREADS=$JUSTIN_PROCESSORS    
#export OPENBLAS_NUM_THREADS=$JUSTIN_PROCESSORS  
#export JULIA_NUM_THREADS=$JUSTIN_PROCESSORS  
#export MKL_NUM_THREADS=$JUSTIN_PROCESSORS  
#export NUMEXPR_NUM_THREADS=$JUSTIN_PROCESSORS  
#export OMP_NUM_THREADS=$JUSTIN_PROCESSORS   

if [ -z ${JUSTIN_PROCESSORS} ]; then
  JUSTIN_PROCESSORS=1
fi

echo "Justin processors: ${JUSTIN_PROCESSORS}"

export TF_NUM_THREADS=${JUSTIN_PROCESSORS}   
export OPENBLAS_NUM_THREADS=${JUSTIN_PROCESSORS} 
export JULIA_NUM_THREADS=${JUSTIN_PROCESSORS} 
export MKL_NUM_THREADS=${JUSTIN_PROCESSORS} 
export NUMEXPR_NUM_THREADS=${JUSTIN_PROCESSORS} 
export OMP_NUM_THREADS=${JUSTIN_PROCESSORS}  

#
echo "Will use justin-get-file"
#
DID_PFN_RSE=`$JUSTIN_PATH/justin-get-file`
#getfileExit=$?

#if [ $getfileExit -ne 0 ] ; then
#  # Success !
#  # Error -- exit immediately 
#  jobscriptExit=1
#  echo "Error in justin-get-file"
#  exit $jobscriptExit
#fi

##Check that any file was returned
if [ "${DID_PFN_RSE}" == "" ] ; then
  echo "Could not get file"
  exit 0
fi

FILE=`echo ${DID_PFN_RSE} | cut -f2 -d' '`
DID=`echo ${DID_PFN_RSE} | cut -f1 -d' '`
echo "DID: ${DID}"

metacat file show -mj ${DID} > old_md.json
mcExit=$?
if [ $mcExit -eq 0 ] ; then
  echo "old metadata:"
  cat old_md.json
else
  echo "Could not retrieve old metadata"
  exit 1 
fi

#
#
now=$(date -u +"%Y%m%dT%H%M%SZ")
#OUTFILE="${OUTPREFIX:-fd_mc_prod_test}.${JUSTIN_REQUEST_ID}"
#OUTFILE="$OUTFILE.$JUSTIN_JOBSUB_ID.${now}"
#OUTFILE=`echo $OUTFILE | sed -e 's/@/./'`
#
####Run reco2
lar -c "${RECOFCL}" \
    -n "${NEVENTS:--1}" \
    "$FILE" >reco2.log 2>&1
    #-o "$OUTFILE.root" \
    #-n "${NEVENTS:--1}" \
    #"$FILE" >$OUTFILE.log 2>&1

larExit=$?
echo "Reco step lar exit code $larExit"

if [ $larExit -eq 0 ] ; then
  # Success !
  # Log the file for justin and move on to the next step
  #echo "$FILE" > justin-processed-pfns.txt
  echo "Moving on to analysis "
else
  # Error -- exit immediately 
  #jobscriptExit=1
  tail -100 reco2.log
  exit $larExit 
fi

if [ "${DETECTOR}" = "TEST" ] || [ "${DETECTOR}" = "TEST2" ]; then
  echo "Done testing. Exiting"
  exit 0
fi
ORIG_OUTFILE=`ls *reco2.root`
OUTFILE=`echo "${ORIG_OUTFILE}_${now}_reco2" | sed -e 's/reco2.root//'`

mv ${ORIG_OUTFILE} ${OUTFILE}.root

### Get the metadata
##TODO -- convert this is the right file extensions
extractor_prod.py --infile ${OUTFILE}.root --campaign ${CAMPAIGN:-fd_mc_2023a_reco2} \
                  --requestid ritm1780305 --no_crc > ${OUTFILE}.root.json
extractorExit=$?
if [ $extractorExit -eq 0 ] ; then
  # Success !
  echo "Extracted metadata"
else
  # Error -- exit immediately 
  jobscriptExit=1
  echo "Failed to extract md"
  exit $extractorExit
fi

### Convert the metadata to metacat
##TODO -- make sure the RCDS behavior is correct
python $CONVERT_DIR/convert_metadata.py -i ${OUTFILE}.root.json \
                                                -c ${RECOFCL} -j old_md.json \
                                                --app "art.reco2" \
                                                --app_ver "${DUNE_VERSION:-v09_81_00d02}" \
                                                --det "${MDDETTYPE}" \
                                                --parent ${DID}
converterExit=$?
if [ $converterExit -eq 0 ] ; then
  # Success !
  echo "Converted metadata"
else
  # Error -- exit immediately 
  jobscriptExit=1
  echo "Failed to convert md"
  exit $converterExit
fi

##If running VD, there will also be pandora files. Rename these
if [ "${DETECTOR}" = "VD" ]; then
  all_good=true
  mv Validation.root "${OUTFILE}_Validation.root" || all_good=false
  mv Pandora_Events.pndr "${OUTFILE}_Pandora_Events.pndr" || all_good=false

  ##Copy over the metadata for pndr
  ##Edit the fields corresepondingly
  sed ${OUTFILE}.root.json -e 's/full-reconstructed/pandora-info/' > ${OUTFILE}_Pandora_Events.pndr.json || all_good=false
  sed -i ${OUTFILE}_Pandora_Events.pndr.json -e 's/artroot/binary/' || all_good=false
  sed -i ${OUTFILE}_Pandora_Events.pndr.json -e '/art.file_format/d' || all_good=false
  
  ##Copy over the metadata for validation.root 
  ##Edit the fields corresepondingly
  sed ${OUTFILE}.root.json -e 's/full-reconstructed/pandora-info/' > ${OUTFILE}_Validation.root.json || all_good=false
  sed -i ${OUTFILE}_Validation.root.json -e 's/artroot/root/' || all_good=false
  sed -i ${OUTFILE}_Validation.root.json -e '/art.file_format/d' || all_good=false

  if [ $all_good = false ]; then
    echo "Something failed when editing pandora metadata"
    jobscriptExit=1
    exit $jobscriptExit
  fi

fi

ANAOUTFILE="${OUTFILE}_ana"
echo "Will output ana to $ANAOUTFILE"

###Run ana 
lar -c "${ANAFCL}" \
    -n "${NEVENTS:--1}" \
    -T "$ANAOUTFILE.root" \
    "$OUTFILE.root" >ana.log 2>&1


larExit=$?
echo "Ana step lar exit code $larExit"

### TODO: Handle this correctly
if [ $larExit -eq 0 ] ; then
  # Success !
  # Log the file for justin and move on to the next step
  echo "$FILE" > justin-processed-pfns.txt
else
  # Error -- exit immediately 
  jobscriptExit=1
  tail -100 ana.log
  exit $larExit
fi

sed_good=true
sed ${OUTFILE}.root.json -e 's/full-reconstructed/root-tuple-virtual/' > ${ANAOUTFILE}.root.json || sed_good=false
sed -i ${ANAOUTFILE}.root.json -e 's/artroot/root/' || sed_good=false
sed -i ${ANAOUTFILE}.root.json -e '/art.file_format/d' || sed_good=false
sed -i ${ANAOUTFILE}.root.json -e '/art.process/d' || sed_good=false
sed -i ${ANAOUTFILE}.root.json -e "s/${RECOFCL}/${ANAFCL}/" || sed_good=false
sed -i ${ANAOUTFILE}.root.json -e '/campaign/!s/reco2/anatree/' || sed_good=false
sed -i ${ANAOUTFILE}.root.json -e "s/${DID}/${OUTFILE}.root/" || sed_good=false

if [ $sed_good = false ]; then
  echo "Something failed when editing ana metadata"
  jobscriptExit=1
  exit $jobscriptExit
fi

ls
exit 0
justIN time: 2024-09-29 09:26:44 UTC       justIN version: 01.01.08