Jobsub ID 97220.0@justin-prod-sched02.dune.hep.ac.uk
| Jobsub ID | 97220.0@justin-prod-sched02.dune.hep.ac.uk |
| Workflow ID | 4103 |
| Stage ID | 1 |
| User name | amoor@fnal.gov |
| HTCondor Group | group_dune |
| Requested | Processors | 1 |
| RSS bytes | 8388608000 (8000 MiB) |
| Wall seconds limit | 80000 (22 hours) |
| Submitted time | 2024-11-14 22:22:52 |
| Site | US_FNAL-FermiGrid |
| Entry | FNAL_GPGrid_ce03_mcore_op_duneonly |
| Last heartbeat | 2024-11-15 01:28:28 |
| From worker node | Hostname | dunegli-3995301-0-fnpc23004.fnal.gov |
| cpuinfo | AMD EPYC 7543 32-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 8388608000 (8000 MiB) |
| Wall seconds limit | 172800 (48 hours) |
| Inner Apptainer? | True |
| Job state | outputting_failed |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk |
| Started | 2024-11-14 22:24:20 |
| Input files | usertests:000375_reco_data_2024-11-14T_092942Z.root
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Outputting started | |
| Output files | |
| Finished | 2024-11-15 01:28:28 |
| List job events Wrapper job log |
Jobscript log (last 10,000 characters)
AFM g4 jobscript.
Input PFN = root://fndca1.fnal.gov:1094/pnfs/fnal.gov/usr/dune/persistent/staging/usertests/60/df/000375_reco_data_2024-11-14T_092942Z.root
Setting up larsoft UPS area... /cvmfs/larsoft.opensciencegrid.org
Setting up DUNE UPS area... /cvmfs/dune.opensciencegrid.org/products/dune/
/cvmfs/larsoft.opensciencegrid.org/products/xrootd/v5_4_3b/Linux64bit+3.10-2.17-e20-p3913-prof/lib/libXrdPosixPreload.so
../justin-jobscript: line 72: 1127 Segmentation fault (core dumped) lar -c $FCL_FILE $events_option -o $outFile "$pfn" > ${fname}_reco_${now}.log 2>&1
=== Start last 100 lines of lar log file ===
%MSG-i generatePrimaries: larg4Main:largeant@BeginModule 14-Nov-2024 23:07:15 UTC run: 20000031 subRun: 0 event: 655 MCTruthEventAction.cc:112
Generating 1 particles
%MSG
%MSG-i ParticleListActionService: larg4Main:largeant@BeginModule 14-Nov-2024 23:07:15 UTC run: 20000031 subRun: 0 event: 655
Not Stored Process summary:
compt : 10533
Pair : 28
annihil : 330
phot : 3113
Brem : 2924
conv : 302
Ion : 3212
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 14-Nov-2024 23:07:15 UTC run: 20000031 subRun: 0 event: 655 ParticleListAction.cc:701
MCTruth Handles Size: 1
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 14-Nov-2024 23:07:15 UTC run: 20000031 subRun: 0 event: 655 ParticleListAction.cc:708
mclistHandle Size: 1
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 14-Nov-2024 23:07:15 UTC run: 20000031 subRun: 0 event: 655 ParticleListAction.cc:711
Found 1 particles
%MSG
%MSG-i NuRandomService: IonAndScint:IonAndScint@BeginModule 14-Nov-2024 23:07:15 UTC run: 20000031 subRun: 0 event: 655
Random seed for this event, engine 'IonAndScint.ISCalcAlg': 70936157
%MSG
IonAndScint Module Producer
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneUInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneVInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneZInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveOuter
%MSG-i NuRandomService: SimDriftElectrons:elecDrift@BeginModule 14-Nov-2024 23:07:15 UTC run: 20000031 subRun: 0 event: 655
Random seed for this event, engine 'elecDrift': 514734393
%MSG
%MSG-i NuRandomService: PDFastSimPAR:PDFastSim@BeginModule 14-Nov-2024 23:07:15 UTC run: 20000031 subRun: 0 event: 655
Random seed for this event, engine 'PDFastSim.photon': 46521047
%MSG
%MSG-i NuRandomService: PDFastSimPAR:PDFastSim@BeginModule 14-Nov-2024 23:07:15 UTC run: 20000031 subRun: 0 event: 655
Random seed for this event, engine 'PDFastSim.scinttime': 369592035
%MSG
%MSG-w ParticleInventory: ProcessEvent 14-Nov-2024 23:07:15 UTC run: 20000031 subRun: 0 event: 656
Rebuild failed to get the MCParticles. This is expected when running on a generation or simulation step.
%MSG
%MSG-w ParticleInventory: ProcessEvent 14-Nov-2024 23:07:15 UTC run: 20000031 subRun: 0 event: 656
Rebuild failed to get the MCParticles. This is expected when running on a generation or simulation step.
%MSG
%MSG-w ParticleInventory: ProcessEvent 14-Nov-2024 23:07:15 UTC run: 20000031 subRun: 0 event: 656
Rebuild failed to get the MCParticles. This is expected when running on a generation or simulation step.
%MSG
%MSG-w BackTrackerService: ProcessEvent 14-Nov-2024 23:07:15 UTC run: 20000031 subRun: 0 event: 656
Rebuild failed to get the SimChannels. This is expected when running on a generation or simulation step.
%MSG
%MSG-w PhotonBackTrackerService: ProcessEvent 14-Nov-2024 23:07:15 UTC run: 20000031 subRun: 0 event: 656
Rebuild failed to get the OpDetBTRs. This is expected when running on a generation or simulation step.
%MSG
%MSG-i NuRandomService: larg4Main:largeant@BeginModule 14-Nov-2024 23:07:15 UTC run: 20000031 subRun: 0 event: 656
Random seed for this event, engine 'largeant': 198088544
%MSG
%MSG-i generatePrimaries: larg4Main:largeant@BeginModule 14-Nov-2024 23:07:15 UTC run: 20000031 subRun: 0 event: 656 MCTruthEventAction.cc:112
Generating 1 particles
%MSG
%MSG-i ParticleListActionService: larg4Main:largeant@BeginModule 14-Nov-2024 23:08:46 UTC run: 20000031 subRun: 0 event: 656
Not Stored Process summary:
conv : 86284
Ion : 226952
compt : 1785431
Pair : 24
annihil : 86314
phot : 576954
Brem : 529777
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 14-Nov-2024 23:08:46 UTC run: 20000031 subRun: 0 event: 656 ParticleListAction.cc:701
MCTruth Handles Size: 1
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 14-Nov-2024 23:08:46 UTC run: 20000031 subRun: 0 event: 656 ParticleListAction.cc:708
mclistHandle Size: 1
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 14-Nov-2024 23:08:46 UTC run: 20000031 subRun: 0 event: 656 ParticleListAction.cc:711
Found 1 particles
%MSG
%MSG-i NuRandomService: IonAndScint:IonAndScint@BeginModule 14-Nov-2024 23:08:46 UTC run: 20000031 subRun: 0 event: 656
Random seed for this event, engine 'IonAndScint.ISCalcAlg': 396838343
%MSG
IonAndScint Module Producer
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneUInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneVInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneZInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveOuter
%MSG-i NuRandomService: SimDriftElectrons:elecDrift@BeginModule 14-Nov-2024 23:08:53 UTC run: 20000031 subRun: 0 event: 656
Random seed for this event, engine 'elecDrift': 213176949
%MSG
%MSG-i NuRandomService: PDFastSimPAR:PDFastSim@BeginModule 14-Nov-2024 23:10:02 UTC run: 20000031 subRun: 0 event: 656
Random seed for this event, engine 'PDFastSim.photon': 234742479
%MSG
%MSG-i NuRandomService: PDFastSimPAR:PDFastSim@BeginModule 14-Nov-2024 23:10:02 UTC run: 20000031 subRun: 0 event: 656
Random seed for this event, engine 'PDFastSim.scinttime': 546648223
%MSG
=== End last 100 lines of lar log file ===
lar exit code 0
Traceback (most recent call last):
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 434, in <module>
main()
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 373, in main
mddict = expSpecificMetadata.getmetadata()
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 344, in getmetadata
jobt = self.get_job(proc)
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 69, in get_job
raise RuntimeError('sam_metadata_dumper returned nonzero exit status {}.'.format(rc))
RuntimeError: sam_metadata_dumper returned nonzero exit status 1.
extractor_prod.py exit code 1
Error reading metadata from file: Expecting value: line 1 column 1 (char 0)
pdjson2metadata exit code 1
.:
total 1539904
-rw-r--r-- 1 dunegli fnalgrid 1574464519 Nov 15 01:28 RootOutput-4ac9-6ff6-aee0-f51b.root
-rw-r--r-- 1 dunegli fnalgrid 2378780 Nov 14 23:10 000375_reco_data_2024-11-14T_092942Z_reco_2024-11-14T_222427Z.log
-rw-r--r-- 1 dunegli fnalgrid 7414 Nov 15 01:28 jobscript.log
-rw-r--r-- 1 dunegli fnalgrid 274 Nov 14 22:24 TFileService-7d57-1e70-6a7e-085b.root
-rw-r--r-- 1 dunegli fnalgrid 104 Nov 14 22:24 all-input-dids.txt
-rw-r--r-- 1 dunegli fnalgrid 0 Nov 15 01:28 000375_reco_data_2024-11-14T_092942Z_reco_data_2024-11-14T_222427Z.root.ext.json
-rw-r--r-- 1 dunegli fnalgrid 0 Nov 15 01:28 000375_reco_data_2024-11-14T_092942Z_reco_data_2024-11-14T_222427Z.root.json 