Jobsub ID 83169.1@justin-prod-sched02.dune.hep.ac.uk
| Jobsub ID | 83169.1@justin-prod-sched02.dune.hep.ac.uk |
| Workflow ID | 3707 |
| Stage ID | 1 |
| User name | calcuttj@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2024-10-17 11:42:35 |
| Site | US_UCSD |
| Entry | CMSHTPC_T2_US_UCSD_gw6 |
| Last heartbeat | 2024-10-17 14:38:27 |
| From worker node | Hostname | mh-7662-15.t2.ucsd.edu |
| cpuinfo | AMD EPYC 7662 64-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 171000 (47 hours) |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk |
| Started | 2024-10-17 14:00:20 |
| Input files | hd-protodune:np04hd_raw_run027444_000013_dataflow0_datawriter_0_20240626T133644.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Outputting started | |
| Output files | |
| Finished | 2024-10-17 14:38:27 |
| Saved logs | justin-logs:83169.1-justin-prod-sched02.dune.hep.ac.uk.logs.tgz |
| List job events Wrapper job log |
Jobscript log (last 10,000 characters)
ducts/g4tendl/v1_3_2/G4TENDL1.3.2
SETUP_LARANA=larana v09_15_09 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_LARSOFT=larsoft v09_91_02 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_CETLIB=cetlib v3_18_02 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_FHICLCPP=fhiclcpp v4_18_04 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
OPENBLAS_INC=/cvmfs/larsoft.opensciencegrid.org/products/openblas/v0_3_23/Linux64bit+3.10-2.17-e26/include
PYTHON_INCLUDE=/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/include/python3.9
_=/usr/bin/env
Will use justin-get-file
pfn: root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/e9/d7/np04hd_raw_run027444_000013_dataflow0_datawriter_0_20240626T133644.hdf5
did: hd-protodune:np04hd_raw_run027444_000013_dataflow0_datawriter_0_20240626T133644.hdf5
Running reco stage1
The following module labels are either not assigned to any path,
or they have been assigned to ignored path(s):
crtreco
crttag
emtrkmichelid
gaushit
hitpdune
nhitsfilter
opdec
opflash
ophitspe
opslicer
pandora
pandoraGnocchiCalo
pandoraGnocchiCalonosce
pandoraShower
pandoraShowercalo
pandoraShowercalonosce
pandoraTrack
pandoraWriter
pandoracalo
pandoracalonosce
pandorapid
reco3d
Info in <TGeoManager::Import>: Reading geometry from file: /cvmfs/dune.opensciencegrid.org/products/dune/dunecore/v09_91_02d01/gdml/protodunehd_v6_refactored.gdml
Info in <TGeoManager::TGeoManager>: Geometry GDMLImport, Geometry imported from GDML created
Info in <TGeoManager::SetTopVolume>: Top volume is volWorld. Master volume is volWorld
Info in <TGeoNavigator::BuildCache>: --- Maximum geometry depth set to 100
Info in <TGeoManager::CheckGeometry>: Fixing runtime shapes...
Info in <TGeoManager::CheckGeometry>: ...Nothing to fix
Info in <TGeoManager::CloseGeometry>: Counting nodes...
Info in <TGeoManager::Voxelize>: Voxelizing...
Info in <TGeoManager::CloseGeometry>: Building cache...
Info in <TGeoManager::CountLevels>: max level = 5, max placements = 1148
Info in <TGeoManager::CloseGeometry>: 25608 nodes/ 5535 volume UID's in Geometry imported from GDML
Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------
DAPHNE Channel Map: Building DAPHNE channel map from file DAPHNE_test5_ChannelMap_v1.txt
PD2HD Channel Map: Building TPC wiremap from file PD2HDChannelMap_WIBEth_electronics_v1.txt
Inputer: "wclsRawFrameSource"
Outputer: "wclsFrameSaver:nfsaver"
wclsFrameSaver: promising to produce raw::RawDigits named "raw"
wclsFrameSaver: promising to produce channel masks named "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
17-Oct-2024 07:03:16 PDT Opened output file with pattern "%ifb_reco_stage1.root"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
17-Oct-2024 07:38:07 PDT Closed output file "np04hd_raw_run027444_000013_dataflow0_datawriter_0_20240626T133644_reco_stage1.root"
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 2178.31 2178.31 2178.31 2178.31 0 1
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 4.0596e-05 7.36418e-05 0.000208763 6.7803e-05 3.84893e-05 16
produce:tpcrawdecoder:PDHDTPCReader 78.5244 93.1663 121.798 91.2628 10.7244 16
produce:triggerrawdecoder:PDHDTriggerReader3 0.131865 0.140801 0.243277 0.132468 0.0269936 16
produce:timingrawdecoder:PDHDTimingRawDecoder 0.0658072 0.0712801 0.147967 0.0661729 0.0198013 16
produce:pdhddaphne:DAPHNEReaderPDHD 0.000161414 0.000297473 0.000549115 0.000293949 0.000105244 16
produce:fembfilter:PDHDFEMBFilter 6.3199e-05 9.40912e-05 0.000338799 7.5698e-05 6.45241e-05 16
produce:wclsdatahdfilter:WireCellToolkit 31.6068 32.1569 32.7664 32.1238 0.356237 16
[art]:TriggerResults:TriggerResultInserter 1.4066e-05 3.81982e-05 0.000202732 2.51175e-05 4.54374e-05 16
end_path:out1:RootOutput 2.755e-06 5.32438e-06 2.135e-05 4.4535e-06 4.19639e-06 16
end_path:out1:RootOutput(write) 10.3547 10.6075 10.853 10.5939 0.155762 16
===================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5090.45 MB
Peak resident set size usage (VmHWM): 3581.98 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 17-Oct-2024 07:38:07 PDT ModuleEndJob
---- EventRangeOverlap BEGIN
Attempt to merge event ranges that both contain one or more of the same events
Run: 27444
SubRun: 1 Event range: [13,14) vs.
SubRun: 1 Event range: [13,14)
---- EventRangeOverlap END
---- EventRangeOverlap BEGIN
Attempt to merge event ranges that both contain one or more of the same events
Run: 27444
SubRun: 1 Event range: [13,14) vs.
SubRun: 1 Event range: [13,14)
---- EventRangeOverlap END
%MSG
Art has completed and will exit with status 1.
Error in reco1 