Jobsub ID 83101.1@justin-prod-sched02.dune.hep.ac.uk
| Jobsub ID | 83101.1@justin-prod-sched02.dune.hep.ac.uk |
| Workflow ID | 3699 |
| Stage ID | 1 |
| User name | calcuttj@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2024-10-17 09:48:00 |
| Site | US_UCSD |
| Entry | CMSHTPC_T2_US_UCSD_gw6 |
| Last heartbeat | 2024-10-17 14:25:42 |
| From worker node | Hostname | sdsc-59.t2.ucsd.edu |
| cpuinfo | Intel(R) Xeon(R) CPU E5-2680 v4 @ 2.40GHz |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 171000 (47 hours) |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk |
| Started | 2024-10-17 13:53:55 |
| Input files | hd-protodune:np04hd_raw_run027444_000001_dataflow0_datawriter_0_20240626T133446.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Outputting started | |
| Output files | |
| Finished | 2024-10-17 14:25:42 |
| Saved logs | justin-logs:83101.1-justin-prod-sched02.dune.hep.ac.uk.logs.tgz |
| List job events Wrapper job log |
Jobscript log (last 10,000 characters)
.org/products/g4tendl/v1_3_2/G4TENDL1.3.2
SETUP_LARANA=larana v09_15_09 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_LARSOFT=larsoft v09_91_02 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_CETLIB=cetlib v3_18_02 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_FHICLCPP=fhiclcpp v4_18_04 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
OPENBLAS_INC=/cvmfs/larsoft.opensciencegrid.org/products/openblas/v0_3_23/Linux64bit+3.10-2.17-e26/include
PYTHON_INCLUDE=/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/include/python3.9
_=/usr/bin/env
Will use justin-get-file
pfn: root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/3a/84/np04hd_raw_run027444_000001_dataflow0_datawriter_0_20240626T133446.hdf5
did: hd-protodune:np04hd_raw_run027444_000001_dataflow0_datawriter_0_20240626T133446.hdf5
Running reco stage1
The following module labels are either not assigned to any path,
or they have been assigned to ignored path(s):
crtreco
crttag
emtrkmichelid
gaushit
hitpdune
nhitsfilter
opdec
opflash
ophitspe
opslicer
pandora
pandoraGnocchiCalo
pandoraGnocchiCalonosce
pandoraShower
pandoraShowercalo
pandoraShowercalonosce
pandoraTrack
pandoraWriter
pandoracalo
pandoracalonosce
pandorapid
reco3d
Info in <TGeoManager::Import>: Reading geometry from file: /cvmfs/dune.opensciencegrid.org/products/dune/dunecore/v09_91_02d01/gdml/protodunehd_v6_refactored.gdml
Info in <TGeoManager::TGeoManager>: Geometry GDMLImport, Geometry imported from GDML created
Info in <TGeoManager::SetTopVolume>: Top volume is volWorld. Master volume is volWorld
Info in <TGeoNavigator::BuildCache>: --- Maximum geometry depth set to 100
Info in <TGeoManager::CheckGeometry>: Fixing runtime shapes...
Info in <TGeoManager::CheckGeometry>: ...Nothing to fix
Info in <TGeoManager::CloseGeometry>: Counting nodes...
Info in <TGeoManager::Voxelize>: Voxelizing...
Info in <TGeoManager::CloseGeometry>: Building cache...
Info in <TGeoManager::CountLevels>: max level = 5, max placements = 1148
Info in <TGeoManager::CloseGeometry>: 25608 nodes/ 5535 volume UID's in Geometry imported from GDML
Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------
DAPHNE Channel Map: Building DAPHNE channel map from file DAPHNE_test5_ChannelMap_v1.txt
PD2HD Channel Map: Building TPC wiremap from file PD2HDChannelMap_WIBEth_electronics_v1.txt
Inputer: "wclsRawFrameSource"
Outputer: "wclsFrameSaver:nfsaver"
wclsFrameSaver: promising to produce raw::RawDigits named "raw"
wclsFrameSaver: promising to produce channel masks named "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
17-Oct-2024 06:56:30 PDT Opened output file with pattern "%ifb_reco_stage1.root"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
17-Oct-2024 07:25:19 PDT Closed output file "np04hd_raw_run027444_000001_dataflow0_datawriter_0_20240626T133446_reco_stage1.root"
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 1766.5 1766.5 1766.5 1766.5 0 1
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 3.6384e-05 0.000132118 0.000632378 5.2495e-05 0.000190146 16
produce:tpcrawdecoder:PDHDTPCReader 44.4007 62.1483 76.4057 64.7611 9.90603 16
produce:triggerrawdecoder:PDHDTriggerReader3 0.132948 0.133763 0.134986 0.133612 0.000615837 16
produce:timingrawdecoder:PDHDTimingRawDecoder 0.0665145 0.0960639 0.534617 0.0667124 0.113234 16
produce:pdhddaphne:DAPHNEReaderPDHD 0.000264794 0.000321443 0.00062954 0.00028693 8.71747e-05 16
produce:fembfilter:PDHDFEMBFilter 0.000113759 0.000160007 0.00041518 0.000140962 6.98299e-05 16
produce:wclsdatahdfilter:WireCellToolkit 33.6785 34.4271 35.8748 34.2416 0.581407 16
[art]:TriggerResults:TriggerResultInserter 2.9017e-05 4.36454e-05 9.5268e-05 3.88395e-05 1.54784e-05 16
end_path:out1:RootOutput 4.628e-06 6.867e-06 2.2192e-05 5.5905e-06 4.0604e-06 16
end_path:out1:RootOutput(write) 13.0777 13.5989 14.2912 13.5507 0.309935 16
===================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5086.48 MB
Peak resident set size usage (VmHWM): 3545.46 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 17-Oct-2024 07:25:19 PDT ModuleEndJob
---- EventRangeOverlap BEGIN
Attempt to merge event ranges that both contain one or more of the same events
Run: 27444
SubRun: 1 Event range: [1,2) vs.
SubRun: 1 Event range: [1,2)
---- EventRangeOverlap END
---- EventRangeOverlap BEGIN
Attempt to merge event ranges that both contain one or more of the same events
Run: 27444
SubRun: 1 Event range: [1,2) vs.
SubRun: 1 Event range: [1,2)
---- EventRangeOverlap END
%MSG
Art has completed and will exit with status 1.
Error in reco1 