Jobsub ID 83101.0@justin-prod-sched02.dune.hep.ac.uk
| Jobsub ID | 83101.0@justin-prod-sched02.dune.hep.ac.uk |
| Workflow ID | 3699 |
| Stage ID | 1 |
| User name | calcuttj@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2024-10-17 09:48:00 |
| Site | US_FNAL-FermiGrid |
| Entry | FNAL_GPGrid_ce03_mcore_op_duneonly |
| Last heartbeat | 2024-10-17 14:19:25 |
| From worker node | Hostname | dunegli-3968761-0-fnpc19130.fnal.gov |
| cpuinfo | AMD EPYC 7502 32-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 172800 (48 hours) |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk |
| Started | 2024-10-17 13:57:15 |
| Input files | hd-protodune:np04hd_raw_run027444_000011_dataflow0_datawriter_0_20240626T133623.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Outputting started | |
| Output files | |
| Finished | 2024-10-17 14:19:25 |
| Saved logs | justin-logs:83101.0-justin-prod-sched02.dune.hep.ac.uk.logs.tgz |
| List job events Wrapper job log |
Jobscript log (last 10,000 characters)
ducts/g4tendl/v1_3_2/G4TENDL1.3.2
SETUP_LARANA=larana v09_15_09 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_LARSOFT=larsoft v09_91_02 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_CETLIB=cetlib v3_18_02 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_FHICLCPP=fhiclcpp v4_18_04 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
OPENBLAS_INC=/cvmfs/larsoft.opensciencegrid.org/products/openblas/v0_3_23/Linux64bit+3.10-2.17-e26/include
PYTHON_INCLUDE=/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/include/python3.9
_=/usr/bin/env
Will use justin-get-file
pfn: root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/7f/1f/np04hd_raw_run027444_000011_dataflow0_datawriter_0_20240626T133623.hdf5
did: hd-protodune:np04hd_raw_run027444_000011_dataflow0_datawriter_0_20240626T133623.hdf5
Running reco stage1
The following module labels are either not assigned to any path,
or they have been assigned to ignored path(s):
crtreco
crttag
emtrkmichelid
gaushit
hitpdune
nhitsfilter
opdec
opflash
ophitspe
opslicer
pandora
pandoraGnocchiCalo
pandoraGnocchiCalonosce
pandoraShower
pandoraShowercalo
pandoraShowercalonosce
pandoraTrack
pandoraWriter
pandoracalo
pandoracalonosce
pandorapid
reco3d
Info in <TGeoManager::Import>: Reading geometry from file: /cvmfs/dune.opensciencegrid.org/products/dune/dunecore/v09_91_02d01/gdml/protodunehd_v6_refactored.gdml
Info in <TGeoManager::TGeoManager>: Geometry GDMLImport, Geometry imported from GDML created
Info in <TGeoManager::SetTopVolume>: Top volume is volWorld. Master volume is volWorld
Info in <TGeoNavigator::BuildCache>: --- Maximum geometry depth set to 100
Info in <TGeoManager::CheckGeometry>: Fixing runtime shapes...
Info in <TGeoManager::CheckGeometry>: ...Nothing to fix
Info in <TGeoManager::CloseGeometry>: Counting nodes...
Info in <TGeoManager::Voxelize>: Voxelizing...
Info in <TGeoManager::CloseGeometry>: Building cache...
Info in <TGeoManager::CountLevels>: max level = 5, max placements = 1148
Info in <TGeoManager::CloseGeometry>: 25608 nodes/ 5535 volume UID's in Geometry imported from GDML
Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------
DAPHNE Channel Map: Building DAPHNE channel map from file DAPHNE_test5_ChannelMap_v1.txt
PD2HD Channel Map: Building TPC wiremap from file PD2HDChannelMap_WIBEth_electronics_v1.txt
Inputer: "wclsRawFrameSource"
Outputer: "wclsFrameSaver:nfsaver"
wclsFrameSaver: promising to produce raw::RawDigits named "raw"
wclsFrameSaver: promising to produce channel masks named "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
17-Oct-2024 13:58:54 UTC Opened output file with pattern "%ifb_reco_stage1.root"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=16384 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
17-Oct-2024 14:17:29 UTC Closed output file "np04hd_raw_run027444_000011_dataflow0_datawriter_0_20240626T133623_reco_stage1.root"
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 1144.26 1144.26 1144.26 1144.26 0 1
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 2.5521e-05 4.07141e-05 8.1081e-05 3.6775e-05 1.36474e-05 16
produce:tpcrawdecoder:PDHDTPCReader 23.3514 31.8154 37.2205 32.1739 3.47271 16
produce:triggerrawdecoder:PDHDTriggerReader3 0.0539204 0.0545565 0.0556709 0.0544402 0.000478467 16
produce:timingrawdecoder:PDHDTimingRawDecoder 0.0268276 0.0273815 0.0309436 0.0271034 0.00095396 16
produce:pdhddaphne:DAPHNEReaderPDHD 0.000134991 0.000167359 0.000359942 0.000147116 5.43671e-05 16
produce:fembfilter:PDHDFEMBFilter 3.627e-05 6.36761e-05 0.000328792 4.3786e-05 6.91222e-05 16
produce:wclsdatahdfilter:WireCellToolkit 28.3483 28.7071 29.2926 28.6698 0.231405 16
[art]:TriggerResults:TriggerResultInserter 1.223e-05 2.18889e-05 8.5341e-05 1.89055e-05 1.66569e-05 16
end_path:out1:RootOutput 3.64e-06 7.88375e-06 3.148e-05 6.83e-06 6.48714e-06 16
end_path:out1:RootOutput(write) 10.6947 10.911 11.2096 10.9047 0.144374 16
===================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5061.22 MB
Peak resident set size usage (VmHWM): 3676.06 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 17-Oct-2024 14:17:30 UTC ModuleEndJob
---- EventRangeOverlap BEGIN
Attempt to merge event ranges that both contain one or more of the same events
Run: 27444
SubRun: 1 Event range: [11,12) vs.
SubRun: 1 Event range: [11,12)
---- EventRangeOverlap END
---- EventRangeOverlap BEGIN
Attempt to merge event ranges that both contain one or more of the same events
Run: 27444
SubRun: 1 Event range: [11,12) vs.
SubRun: 1 Event range: [11,12)
---- EventRangeOverlap END
%MSG
Art has completed and will exit with status 1.
Error in reco1 