Jobsub ID 79826.8@justin-prod-sched02.dune.hep.ac.uk
Jobsub ID | 79826.8@justin-prod-sched02.dune.hep.ac.uk |
Workflow ID | 3515 |
Stage ID | 1 |
User name | calcuttj@fnal.gov |
HTCondor Group | group_dune.prod_mcsim |
Requested | Processors | 1 |
RSS bytes | 4193255424 (3999 MiB) |
Wall seconds limit | 18000 (5 hours) |
Submitted time | 2024-09-27 04:48:15 |
Site | CA_Victoria |
Entry | DUNE_CA_Victoria_dune-condor_whole |
Last heartbeat | 2024-09-27 09:54:05 |
From worker node | Hostname | dune--heprc--3456932580--41021190986552-2 |
cpuinfo | Intel Core Processor (Broadwell, IBRS) |
OS release | Scientific Linux release 7.9 (Nitrogen) |
Processors | 1 |
RSS bytes | 4193255424 (3999 MiB) |
Wall seconds limit | 171000 (47 hours) |
Inner Apptainer? | True |
Job state | jobscript_error |
Allocator name | justin-allocator-pro.dune.hep.ac.uk |
Started | 2024-09-27 08:26:40 |
Input files | hd-protodune:np04hd_raw_run027388_0323_dataflow0_datawriter_0_20240622T231554.hdf5
|
Jobscript | Exit code | 137 |
Real time | 0m (0s) |
CPU time | 0m (0s = 0%) |
Outputting started | |
Output files | |
Finished | 2024-09-27 09:54:05 |
Saved logs | justin-logs:79826.8-justin-prod-sched02.dune.hep.ac.uk.logs.tgz |
List job events Wrapper job log |
Jobscript log (last 10,000 characters)
b
DUNERECO_DIR=/cvmfs/dune.opensciencegrid.org/products/dune/dunereco/v09_91_02d01
WIRECELL_LIB=/cvmfs/larsoft.opensciencegrid.org/products/wirecell/v0_27_1/Linux64bit+3.10-2.17-e26-prof/lib64
TRITON_INC=/cvmfs/larsoft.opensciencegrid.org/products/triton/v2_25_0d/Linux64bit+3.10-2.17-e26/include
LIBJPEG_TURBO_INC=/cvmfs/larsoft.opensciencegrid.org/products/libjpeg_turbo/v2_1_0/Linux64bit+3.10-2.17/include
LAREVENTDISPLAY_LIB=/cvmfs/larsoft.opensciencegrid.org/products/lareventdisplay/v09_11_09/slf7.x86_64.e26.prof/lib
PPFX_VERSION=v02_20_02
NUG4_VERSION=v1_16_06
SETUP_LARDATAALG=lardataalg v09_17_05 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
LARCOREALG_INC=/cvmfs/larsoft.opensciencegrid.org/products/larcorealg/v09_13_02/include
G4PARTICLEHPDATA=/cvmfs/larsoft.opensciencegrid.org/products/g4tendl/v1_3_2/G4TENDL1.3.2
SETUP_LARANA=larana v09_15_09 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_LARSOFT=larsoft v09_91_02 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_CETLIB=cetlib v3_18_02 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_FHICLCPP=fhiclcpp v4_18_04 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
OPENBLAS_INC=/cvmfs/larsoft.opensciencegrid.org/products/openblas/v0_3_23/Linux64bit+3.10-2.17-e26/include
PYTHON_INCLUDE=/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/include/python3.9
_=/usr/bin/env
Will use justin-get-file
pfn: root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/77/4c/np04hd_raw_run027388_0323_dataflow0_datawriter_0_20240622T231554.hdf5
did: hd-protodune:np04hd_raw_run027388_0323_dataflow0_datawriter_0_20240622T231554.hdf5
Running reco stage1
The following module labels are either not assigned to any path,
or they have been assigned to ignored path(s):
crtreco
crttag
emtrkmichelid
gaushit
hitpdune
nhitsfilter
opdec
opflash
ophitspe
opslicer
pandora
pandoraGnocchiCalo
pandoraGnocchiCalonosce
pandoraShower
pandoraShowercalo
pandoraShowercalonosce
pandoraTrack
pandoraWriter
pandoracalo
pandoracalonosce
pandorapid
reco3d
Info in <TGeoManager::Import>: Reading geometry from file: /cvmfs/dune.opensciencegrid.org/products/dune/dunecore/v09_91_02d01/gdml/protodunehd_v6_refactored.gdml
Info in <TGeoManager::TGeoManager>: Geometry GDMLImport, Geometry imported from GDML created
Info in <TGeoManager::SetTopVolume>: Top volume is volWorld. Master volume is volWorld
Info in <TGeoNavigator::BuildCache>: --- Maximum geometry depth set to 100
Info in <TGeoManager::CheckGeometry>: Fixing runtime shapes...
Info in <TGeoManager::CheckGeometry>: ...Nothing to fix
Info in <TGeoManager::CloseGeometry>: Counting nodes...
Info in <TGeoManager::Voxelize>: Voxelizing...
Info in <TGeoManager::CloseGeometry>: Building cache...
Info in <TGeoManager::CountLevels>: max level = 5, max placements = 1148
Info in <TGeoManager::CloseGeometry>: 25608 nodes/ 5535 volume UID's in Geometry imported from GDML
Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------
DAPHNE Channel Map: Building DAPHNE channel map from file DAPHNE_test5_ChannelMap_v1.txt
PD2HD Channel Map: Building TPC wiremap from file PD2HDChannelMap_WIBEth_electronics_v1.txt
Inputer: "wclsRawFrameSource"
Outputer: "wclsFrameSaver:nfsaver"
wclsFrameSaver: promising to produce raw::RawDigits named "raw"
wclsFrameSaver: promising to produce channel masks named "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
27-Sep-2024 08:37:16 UTC Opened output file with pattern "%ifb_reco_stage1.root"
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 13 0 16
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 13 0 33
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
../justin-jobscript: line 145: 1313 Killed LD_PRELOAD=$XROOTD_LIB/libXrdPosixPreload.so lar -c ${FCL1} -n ${nevents} ${extra_line} ${pfn}
Error in reco1