Jobsub ID 79652.170@justin-prod-sched02.dune.hep.ac.uk
| Jobsub ID | 79652.170@justin-prod-sched02.dune.hep.ac.uk |
| Workflow ID | 3510 |
| Stage ID | 1 |
| User name | calcuttj@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2024-09-26 23:49:32 |
| Site | CA_Victoria |
| Entry | DUNE_CA_Victoria_dune-condor_whole |
| Last heartbeat | 2024-09-27 08:25:14 |
| From worker node | Hostname | dune--heprc--3456932580--41021190986552-2 |
| cpuinfo | Intel Core Processor (Broadwell, IBRS) |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 171000 (47 hours) |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk |
| Started | 2024-09-27 04:12:48 |
| Input files | hd-protodune:np04hd_raw_run027312_0007_dataflow1_datawriter_0_20240620T082645.hdf5
|
| Jobscript | Exit code | 137 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Outputting started | |
| Output files | |
| Finished | 2024-09-27 08:25:14 |
| Saved logs | justin-logs:79652.170-justin-prod-sched02.dune.hep.ac.uk.logs.tgz |
| List job events Wrapper job log |
Jobscript log (last 10,000 characters)
ameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 12 0 43
WARNING: Could not find offline channel for 13 0 47
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
WARNING: Could not find offline channel for 9 0 32
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
27-Sep-2024 08:12:28 UTC Closed output file "np04hd_raw_run027312_0007_dataflow1_datawriter_0_20240620T082645_reco_stage1.root"
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 263.489 379.019 515.197 379.499 57.172 35
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 0.00122277 0.00387973 0.0209149 0.00279249 0.00346579 35
produce:tpcrawdecoder:PDHDTPCReader 145.344 223.097 320.325 212.008 47.4447 35
produce:triggerrawdecoder:PDHDTriggerReader3 0.181461 0.762619 2.44706 0.715109 0.568016 35
produce:timingrawdecoder:PDHDTimingRawDecoder 0.075913 0.3148 0.928045 0.162342 0.271714 35
produce:pdhddaphne:DAPHNEReaderPDHD 10.1923 30.5486 78.731 28.3797 16.0764 35
produce:fembfilter:PDHDFEMBFilter 0.00298158 0.036673 0.0908066 0.0372723 0.0162863 35
produce:wclsdatahdfilter:WireCellToolkit 35.5097 75.8984 157.86 66.1926 27.8025 35
[art]:TriggerResults:TriggerResultInserter 0.00109789 0.00658694 0.0275441 0.00325175 0.00692326 35
end_path:out1:RootOutput 0.000265942 0.00129313 0.0133651 0.000658663 0.0022657 35
end_path:out1:RootOutput(write) 22.7827 48.2021 73.047 49.5369 14.5478 35
===================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 3197.66 MB
Peak resident set size usage (VmHWM): 107.577 MB
Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
The following module labels are either not assigned to any path,
or they have been assigned to ignored path(s):
calibana
crtreco
crttag
opdec
opflash
ophitspe
opslicer
pdhddaphne
timingrawdecoder
tpcrawdecoder
triggerrawdecoder
Info in <TGeoManager::Import>: Reading geometry from file: /cvmfs/dune.opensciencegrid.org/products/dune/dunecore/v09_91_02d01/gdml/protodunehd_v6_refactored.gdml
Info in <TGeoManager::TGeoManager>: Geometry GDMLImport, Geometry imported from GDML created
Info in <TGeoManager::SetTopVolume>: Top volume is volWorld. Master volume is volWorld
Info in <TGeoNavigator::BuildCache>: --- Maximum geometry depth set to 100
Info in <TGeoManager::CheckGeometry>: Fixing runtime shapes...
Info in <TGeoManager::CheckGeometry>: ...Nothing to fix
Info in <TGeoManager::CloseGeometry>: Counting nodes...
Info in <TGeoManager::Voxelize>: Voxelizing...
Info in <TGeoManager::CloseGeometry>: Building cache...
Info in <TGeoManager::CountLevels>: max level = 5, max placements = 1148
Info in <TGeoManager::CloseGeometry>: 25608 nodes/ 5535 volume UID's in Geometry imported from GDML
Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------
DAPHNE Channel Map: Building DAPHNE channel map from file DAPHNE_test5_ChannelMap_v1.txt
PD2HD Channel Map: Building TPC wiremap from file PD2HDChannelMap_WIBEth_electronics_v1.txt
tf_graph loaded ProtoBuf graph with status: OK
Inputer: "wclsRawFrameSource"
Outputer: "wclsFrameSaver:spsaver"
wclsFrameSaver: promising to produce recob::Wires named "gauss"
wclsFrameSaver: promising to produce recob::Wires named "wiener"
wclsFrameSaver: promising to produce channel summary named "threshold"
27-Sep-2024 08:16:02 UTC Initiating request to open input file "np04hd_raw_run027312_0007_dataflow1_datawriter_0_20240620T082645_reco_stage1.root"
27-Sep-2024 08:16:07 UTC Opened input file "np04hd_raw_run027312_0007_dataflow1_datawriter_0_20240620T082645_reco_stage1.root"
job begin...
job begin...
Scale HitLimit based on readout window size 5859
HitLimit = 19530
Begin processing the 1st record. run: 27312 subRun: 1 event: 1001 at 27-Sep-2024 08:16:37 UTC
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
../justin-jobscript: line 164: 1363 Killed lar -c ${FCL2} $output_stage1_file
Error in reco2 