Jobsub ID 59679.98@justin-prod-sched02.dune.hep.ac.uk
| Jobsub ID | 59679.98@justin-prod-sched02.dune.hep.ac.uk |
| Workflow ID | 2869 |
| Stage ID | 1 |
| User name | amoor@fnal.gov |
| HTCondor Group | group_dune |
| Requested | Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 80000 (22 hours) |
| Submitted time | 2024-08-19 10:46:53 |
| Site | US_FNAL-FermiGrid |
| Entry | FNAL_GPGrid_ce03_mcore_op_duneonly |
| Last heartbeat | 2024-08-19 14:06:06 |
| From worker node | Hostname | dunegli-3933826-0-fnpc8007.fnal.gov |
| cpuinfo | Intel(R) Xeon(R) CPU E5-2670 v3 @ 2.30GHz |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 172800 (48 hours) |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk |
| Started | 2024-08-19 10:59:45 |
| Input files | usertests:000793_reco_data_2024-08-16T_162901Z.root
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Outputting started | |
| Output files | |
| Finished | 2024-08-19 14:06:06 |
| Saved logs | justin-logs:59679.98-justin-prod-sched02.dune.hep.ac.uk.logs.tgz |
| List job events Wrapper job log |
Jobscript log (last 10,000 characters)
AFM g4 jobscript.
Input PFN = root://fndca1.fnal.gov:1094/pnfs/fnal.gov/usr/dune/persistent/staging/usertests/a9/f1/000793_reco_data_2024-08-16T_162901Z.root
Setting up larsoft UPS area... /cvmfs/larsoft.opensciencegrid.org
Setting up DUNE UPS area... /cvmfs/dune.opensciencegrid.org/products/dune/
/cvmfs/larsoft.opensciencegrid.org/products/xrootd/v5_4_3b/Linux64bit+3.10-2.17-e20-p3913-prof/lib/libXrdPosixPreload.so
../justin-jobscript: line 72: 1280 Segmentation fault (core dumped) lar -c $FCL_FILE $events_option -o $outFile "$pfn" > ${fname}_reco_${now}.log 2>&1
=== Start last 100 lines of lar log file ===
Rebuild failed to get the OpDetBTRs. This is expected when running on a generation or simulation step.
%MSG
%MSG-i NuRandomService: larg4Main:largeant@BeginModule 19-Aug-2024 11:23:59 UTC run: 20000031 subRun: 0 event: 335
Random seed for this event, engine 'largeant': 678251670
%MSG
%MSG-i generatePrimaries: larg4Main:largeant@BeginModule 19-Aug-2024 11:23:59 UTC run: 20000031 subRun: 0 event: 335 MCTruthEventAction.cc:112
Generating 1 particles
%MSG
%MSG-i ParticleListActionService: larg4Main:largeant@BeginModule 19-Aug-2024 11:27:09 UTC run: 20000031 subRun: 0 event: 335
Not Stored Process summary:
compt : 1791680
Pair : 78
annihil : 86002
phot : 575211
Brem : 527959
conv : 85924
Ion : 226220
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 19-Aug-2024 11:27:09 UTC run: 20000031 subRun: 0 event: 335 ParticleListAction.cc:701
MCTruth Handles Size: 1
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 19-Aug-2024 11:27:09 UTC run: 20000031 subRun: 0 event: 335 ParticleListAction.cc:708
mclistHandle Size: 1
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 19-Aug-2024 11:27:09 UTC run: 20000031 subRun: 0 event: 335 ParticleListAction.cc:711
Found 1 particles
%MSG
%MSG-i NuRandomService: IonAndScint:IonAndScint@BeginModule 19-Aug-2024 11:27:09 UTC run: 20000031 subRun: 0 event: 335
Random seed for this event, engine 'IonAndScint.ISCalcAlg': 497143033
%MSG
IonAndScint Module Producer
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneUInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneVInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneZInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveOuter
%MSG-i NuRandomService: SimDriftElectrons:elecDrift@BeginModule 19-Aug-2024 11:27:22 UTC run: 20000031 subRun: 0 event: 335
Random seed for this event, engine 'elecDrift': 238155930
%MSG
%MSG-i NuRandomService: PDFastSimPAR:PDFastSim@BeginModule 19-Aug-2024 11:29:28 UTC run: 20000031 subRun: 0 event: 335
Random seed for this event, engine 'PDFastSim.photon': 159279575
%MSG
%MSG-i NuRandomService: PDFastSimPAR:PDFastSim@BeginModule 19-Aug-2024 11:29:28 UTC run: 20000031 subRun: 0 event: 335
Random seed for this event, engine 'PDFastSim.scinttime': 710343838
%MSG
Plugin version SecClnt v5.4.3 is incompatible with secztn v5.6.8 (must be <= 5.4.x) in sec.protocol libXrdSecztn-5.so
IonAndScint endJob.
19-Aug-2024 14:05:49 UTC Closed input file "root://fndca1.fnal.gov:1094/pnfs/fnal.gov/usr/dune/persistent/staging/usertests/a9/f1/000793_reco_data_2024-08-16T_162901Z.root"
================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
================================================================================================================================
Full event 0.00679465 32.4951 9636.02 0.308255 525.735 335
--------------------------------------------------------------------------------------------------------------------------------
source:RootInput(read) 6.7459e-05 0.000200201 0.0109609 0.000128294 0.000607098 335
simulate:rns:RandomNumberSaver 1.7986e-05 2.72805e-05 0.000197717 2.4142e-05 1.15338e-05 335
simulate:largeant:larg4Main 0.00596355 1.28757 189.691 0.292428 10.7909 335
simulate:IonAndScint:IonAndScint 7.8502e-05 0.0415201 13.0011 0.000118182 0.709261 335
simulate:elecDrift:SimDriftElectrons 4.7673e-05 0.402201 126.385 6.0384e-05 6.89462 335
simulate:PDFastSim:PDFastSimPAR 6.6568e-05 30.7624 9306.94 9.5441e-05 507.812 335
simulate:muonfilter:LArG4ParticleFilter 1.3711e-05 6.00785e-05 0.00232762 2.0203e-05 0.000208427 335
[art]:TriggerResults:TriggerResultInserter 1.1001e-05 1.48822e-05 4.5965e-05 1.3557e-05 3.46139e-06 335
end_path:out1:RootOutput 6.385e-06 1.08425e-05 0.000201664 9.416e-06 1.07783e-05 335
end_path:out1:RootOutput(write) 5.69e-06 0.00048182 0.158671 6.3045e-06 0.0086687 334
================================================================================================================================
%MSG-i NuRandomService: RootOutput:out1@EndJob 19-Aug-2024 14:05:49 UTC ModuleEndJob
Summary of seeds computed by the NuRandomService
Random policy: 'perEvent'
algorithm version: EventTimestamp_v1
Configured value Last value ModuleLabel.InstanceName
(per event) 497143033 IonAndScint.ISCalcAlg
(per event) 159279575 PDFastSim.photon
(per event) 710343838 PDFastSim.scinttime
(per event) 238155930 elecDrift
(per event) 678251670 largeant
%MSG
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 16451.4 MB
Peak resident set size usage (VmHWM): 13152.2 MB
====================================================================================================
TrigReport ---------- Event summary -------------
TrigReport Events total = 335 passed = 2 failed = 333
TrigReport ---------- Modules in End-path ----------
TrigReport Run Success Error Name
TrigReport 2 2 0 out1
TimeReport ---------- Time summary [sec] -------
TimeReport CPU = 10883.930022 Real = 10981.269837
MemReport ---------- Memory summary [base-10 MB] ------
MemReport VmPeak = 16451.4 VmHWM = 13152.2
=== End last 100 lines of lar log file ===
lar exit code 0
Traceback (most recent call last):
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 434, in <module>
main()
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 373, in main
mddict = expSpecificMetadata.getmetadata()
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 344, in getmetadata
jobt = self.get_job(proc)
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 69, in get_job
raise RuntimeError('sam_metadata_dumper returned nonzero exit status {}.'.format(rc))
RuntimeError: sam_metadata_dumper returned nonzero exit status 1.
extractor_prod.py exit code 1
Error reading metadata from file: Expecting value: line 1 column 1 (char 0)
pdjson2metadata exit code 1
.:
total 81516
-rw-r--r-- 1 dunegli fnalgrid 82195603 Aug 19 14:05 RootOutput-5d94-bfed-3f8e-1710.root
-rw-r--r-- 1 dunegli fnalgrid 1249587 Aug 19 14:05 000793_reco_data_2024-08-16T_162901Z_reco_2024-08-19T_105949Z.log
-rw-r--r-- 1 dunegli fnalgrid 7900 Aug 19 14:05 jobscript.log
-rw-r--r-- 1 dunegli fnalgrid 274 Aug 19 11:01 TFileService-725f-47c8-8c68-bc40.root
-rw-r--r-- 1 dunegli fnalgrid 104 Aug 19 10:59 all-input-dids.txt
-rw-r--r-- 1 dunegli fnalgrid 0 Aug 19 14:05 000793_reco_data_2024-08-16T_162901Z_reco_data_2024-08-19T_105949Z.root.ext.json
-rw-r--r-- 1 dunegli fnalgrid 0 Aug 19 14:05 000793_reco_data_2024-08-16T_162901Z_reco_data_2024-08-19T_105949Z.root.json 