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Jobsub ID 59648.37@justin-prod-sched02.dune.hep.ac.uk

Jobsub ID59648.37@justin-prod-sched02.dune.hep.ac.uk
Workflow ID2867
Stage ID1
User namecalcuttj@fnal.gov
HTCondor Groupgroup_dune.prod_mcsim
RequestedProcessors1
RSS bytes4193255424 (3999 MiB)
Wall seconds limit18000 (5 hours)
Submitted time2024-08-19 08:14:50
SiteNL_SURFsara
EntryDUNE_SurfSARA_arc03
Last heartbeat2024-08-19 08:18:05
From worker nodeHostnamewn-ha-09.gina.surfsara.nl
cpuinfoAMD EPYC 7551 32-Core Processor
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors1
RSS bytes4193255424 (3999 MiB)
Wall seconds limit129600 (36 hours)
Inner Apptainer?True
Job statejobscript_error
Allocator namejustin-allocator-pro.dune.hep.ac.uk
Started2024-08-19 08:16:05
Input fileshd-protodune:np04hd_raw_run028762_1617_dataflow3_datawriter_0_20240819T043814.hdf5
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Outputting started 
Output files
Finished2024-08-19 08:18:05
Saved logsjustin-logs:59648.37-justin-prod-sched02.dune.hep.ac.uk.logs.tgz
List job events     Wrapper job log

Jobscript log (last 10,000 characters)

4bit+3.10-2.17:/cvmfs/larsoft.opensciencegrid.org/products/fftw/v3_3_10/Linux64bit+3.10-2.17:/cvmfs/larsoft.opensciencegrid.org/products/root/v6_28_12/Linux64bit+3.10-2.17-e26-p3915-prof:/cvmfs/larsoft.opensciencegrid.org/products/gmp/v6_2_1/Linux64bit+3.10-2.17:/cvmfs/larsoft.opensciencegrid.org/products/mrb/v6_09_06/slf7.x86_64
SETUP_GIT=git v2_45_1 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products
APPTAINER_BIND=/cvmfs,/etc/hosts,/etc/localtime,/cvmfs
GDK2NUFLUXXML=/cvmfs/dune.opensciencegrid.org/products/dune/dunesim/v09_91_02d01/dk2nuconfigs/GDk2Nu.xml
DUNEEXAMPLES_LIB=/cvmfs/dune.opensciencegrid.org/products/dune/duneexamples/v09_91_02d01/slf7.x86_64.e26.prof/lib
SETUP_JSONCPP=jsoncpp v1_9_5a -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
NeutronHPCrossSections=/cvmfs/larsoft.opensciencegrid.org/products/g4particlexs/v2_1/G4NDL4.6
XERCES_C_VERSION=v3_2_3e
GEANT4_FQ_DIR=/cvmfs/larsoft.opensciencegrid.org/products/geant4/v4_10_6_p01g/Linux64bit+3.10-2.17-e26-prof
CETLIB_EXCEPT_DIR=/cvmfs/larsoft.opensciencegrid.org/products/cetlib_except/v1_09_01
CATCH_FQ=Linux64bit+3.10-2.17-e26
LIBXML2_VERSION=v2_9_12
MRB_FQ_DIR=/cvmfs/larsoft.opensciencegrid.org/products/mrb/v6_09_06/slf7.x86_64
SETUP_MRB=mrb v6_09_06 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products
JUSTIN_RSS_MIB=3999
VALGRIND_INC=/cvmfs/larsoft.opensciencegrid.org/products/valgrind/v3_17_0/Linux64bit+3.10-2.17/include
LARSOFTOBJ_LIB=/cvmfs/larsoft.opensciencegrid.org/products/larsoftobj/v09_35_05/slf7.x86_64.e26.prof/lib
BXDECAY0_DIR=/cvmfs/larsoft.opensciencegrid.org/products/bxdecay0/v1_1_0
DELAUNATOR_VERSION=v0_4_0
NUEVDB_DIR=/cvmfs/larsoft.opensciencegrid.org/products/nuevdb/v1_09_08
LARANA_INC=/cvmfs/larsoft.opensciencegrid.org/products/larana/v09_15_09/include
SETUP_RSTARTREE=rstartree v2016_07 -f NULL -z /cvmfs/larsoft.opensciencegrid.org/products
IFDHC_LIB=/cvmfs/larsoft.opensciencegrid.org/products/ifdhc/v2_7/Linux64bit+3.10-2.17-e26-p3915-prof/lib
GENIE=/cvmfs/larsoft.opensciencegrid.org/products/genie/v3_04_02/Linux64bit+3.10-2.17-e26-prof/GENIE-Generator
LHAPDF_VERSION=v6_5_4
LARDATA_INC=/cvmfs/larsoft.opensciencegrid.org/products/lardata/v09_16_05/include
LARDATAALG_INC=/cvmfs/larsoft.opensciencegrid.org/products/lardataalg/v09_17_05/include
SETUP_LARCOREALG=larcorealg v09_13_02 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_G4TENDL=g4tendl v1_3_2 -f NULL -z /cvmfs/larsoft.opensciencegrid.org/products
CATCH_VERSION=v3_3_2
CLHEP_LIB=CLHEP-2.4.7.1
SETUP_POSTGRESQL=postgresql v15_3 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q p3915
SQLITE_FQ=Linux64bit+3.10-2.17
PROTOBUF_VERSION=v3_21_12a
GMP_DIR=/cvmfs/larsoft.opensciencegrid.org/products/gmp/v6_2_1
PRODUCTS=/cvmfs/dune.opensciencegrid.org/products/dune:/cvmfs/larsoft.opensciencegrid.org/products:/cvmfs/larsoft.opensciencegrid.org/packages:/cvmfs/fermilab.opensciencegrid.org/products/common/db/
GENIE_XSEC_TUNE=AR23_20i_00_000
SETUP_DUNECALIB=dunecalib v09_91_02d01 -f Linux64bit+3.10-2.17 -z /cvmfs/dune.opensciencegrid.org/products/dune -q e26:prof
CRYDATAPATH=/cvmfs/larsoft.opensciencegrid.org/products/cry/v1_7q/Linux64bit+3.10-2.17-e26-prof/cry_v1.7/data
LHAPDF_LIB=/cvmfs/larsoft.opensciencegrid.org/products/lhapdf/v6_5_4/Linux64bit+3.10-2.17-e26-p3915-prof/lib
G4INCLDATA=/cvmfs/larsoft.opensciencegrid.org/products/g4incl/v1_0/G4INCL1.0
HEP_CONCURRENCY_FQ_DIR=/cvmfs/larsoft.opensciencegrid.org/products/hep_concurrency/v1_09_02/slf7.x86_64.e26.prof
CETLIB_DIR=/cvmfs/larsoft.opensciencegrid.org/products/cetlib/v3_18_02
CATCH_LIB=/cvmfs/larsoft.opensciencegrid.org/products/catch/v3_3_2/Linux64bit+3.10-2.17-e26/lib
SETUP_SCITOKENS_CPP=scitokens_cpp v1_0_1a -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:sql34001
PROTOBUF_LIB=/cvmfs/larsoft.opensciencegrid.org/products/protobuf/v3_21_12a/Linux64bit+3.10-2.17-e26/lib
ROOT_INC=/cvmfs/larsoft.opensciencegrid.org/products/root/v6_28_12/Linux64bit+3.10-2.17-e26-p3915-prof/include
HUB_DIR=/cvmfs/larsoft.opensciencegrid.org/products/hub/v2_14_2
GEANT4REWEIGHT_DIR=/cvmfs/larsoft.opensciencegrid.org/products/geant4reweight/v01_20_08
DUNERECO_VERSION=v09_91_02d01
LARPANDORA_LIB=/cvmfs/larsoft.opensciencegrid.org/products/larpandora/v09_22_09/slf7.x86_64.e26.prof/lib
IFDH_ART_INC=/cvmfs/larsoft.opensciencegrid.org/products/ifdh_art/v2_17_05/slf7.x86_64.e26.prof/inc
MARLEY_LIB=/cvmfs/larsoft.opensciencegrid.org/products/marley/v1_2_1d/Linux64bit+3.10-2.17-e26-prof/lib
SETUP_LAREVT=larevt v09_10_05 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
HDF5_INC=/cvmfs/larsoft.opensciencegrid.org/products/hdf5/v1_12_2a/Linux64bit+3.10-2.17-e26-prof/include
SETUP_CANVAS=canvas v3_16_04 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
DUNEDETDATAFORMATS_INC=/cvmfs/dune.opensciencegrid.org/products/dune/dunedetdataformats/v4_4_1/include
SETUP_TBB=tbb v2021_9_0 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26
PYTHIA_INC=/cvmfs/larsoft.opensciencegrid.org/products/pythia/v6_4_28x/Linux64bit+3.10-2.17-e26-prof/include
SETUP_DUNESW=dunesw v09_91_02d01 -f Linux64bit+3.10-2.17 -z /cvmfs/dune.opensciencegrid.org/products/dune -q e26:prof
PERL_MM_OPT=INSTALL_BASE=/cvmfs/larsoft.opensciencegrid.org/products/mrb/v6_09_06/slf7.x86_64/CPAN
GIT_EXEC_PATH=/cvmfs/larsoft.opensciencegrid.org/products/git/v2_45_1/Linux64bit+3.10-2.17/libexec/git-core
PROTODUNEANA_INC=/cvmfs/dune.opensciencegrid.org/products/dune/protoduneana/v09_91_02d01/include
DUNEDATAPREP_LIB=/cvmfs/dune.opensciencegrid.org/products/dune/dunedataprep/v09_91_02d01/slf7.x86_64.e26.prof/lib
DUNERECO_DIR=/cvmfs/dune.opensciencegrid.org/products/dune/dunereco/v09_91_02d01
WIRECELL_LIB=/cvmfs/larsoft.opensciencegrid.org/products/wirecell/v0_27_1/Linux64bit+3.10-2.17-e26-prof/lib64
TRITON_INC=/cvmfs/larsoft.opensciencegrid.org/products/triton/v2_25_0d/Linux64bit+3.10-2.17-e26/include
LIBJPEG_TURBO_INC=/cvmfs/larsoft.opensciencegrid.org/products/libjpeg_turbo/v2_1_0/Linux64bit+3.10-2.17/include
LAREVENTDISPLAY_LIB=/cvmfs/larsoft.opensciencegrid.org/products/lareventdisplay/v09_11_09/slf7.x86_64.e26.prof/lib
PPFX_VERSION=v02_20_02
NUG4_VERSION=v1_16_06
SETUP_LARDATAALG=lardataalg v09_17_05 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
LARCOREALG_INC=/cvmfs/larsoft.opensciencegrid.org/products/larcorealg/v09_13_02/include
G4PARTICLEHPDATA=/cvmfs/larsoft.opensciencegrid.org/products/g4tendl/v1_3_2/G4TENDL1.3.2
SETUP_LARANA=larana v09_15_09 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_LARSOFT=larsoft v09_91_02 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_CETLIB=cetlib v3_18_02 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_FHICLCPP=fhiclcpp v4_18_04 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
OPENBLAS_INC=/cvmfs/larsoft.opensciencegrid.org/products/openblas/v0_3_23/Linux64bit+3.10-2.17-e26/include
PYTHON_INCLUDE=/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/include/python3.9
_=/usr/bin/env
Will use justin-get-file
pfn: root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/hd-protodune/9c/47/np04hd_raw_run028762_1617_dataflow3_datawriter_0_20240819T043814.hdf5
did: hd-protodune:np04hd_raw_run028762_1617_dataflow3_datawriter_0_20240819T043814.hdf5
Running reco stage1
The following module labels are either not assigned to any path,
or they have been assigned to ignored path(s):
  crtreco
  crttag
  emtrkmichelid
  gaushit
  hitpdune
  nhitsfilter
  opdec
  opflash
  ophitspe
  opslicer
  pandora
  pandoraGnocchiCalo
  pandoraGnocchiCalonosce
  pandoraShower
  pandoraShowercalo
  pandoraShowercalonosce
  pandoraTrack
  pandoraWriter
  pandoracalo
  pandoracalonosce
  pandorapid
  reco3d
Info in <TGeoManager::Import>: Reading geometry from file: /cvmfs/dune.opensciencegrid.org/products/dune/dunecore/v09_91_02d01/gdml/protodunehd_v6_refactored.gdml
Info in <TGeoManager::TGeoManager>: Geometry GDMLImport, Geometry imported from GDML created
Info in <TGeoManager::SetTopVolume>: Top volume is volWorld. Master volume is volWorld
Info in <TGeoNavigator::BuildCache>: --- Maximum geometry depth set to 100
Info in <TGeoManager::CheckGeometry>: Fixing runtime shapes...
Info in <TGeoManager::CheckGeometry>: ...Nothing to fix
Info in <TGeoManager::CloseGeometry>: Counting nodes...
Info in <TGeoManager::Voxelize>: Voxelizing...
Info in <TGeoManager::CloseGeometry>: Building cache...
Info in <TGeoManager::CountLevels>: max level = 5, max placements = 1148
Info in <TGeoManager::CloseGeometry>: 25608 nodes/ 5535 volume UID's in Geometry imported from GDML
Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------
DAPHNE Channel Map: Building DAPHNE channel map from file DAPHNE_test5_ChannelMap_v1.txt
PD2HD Channel Map: Building TPC wiremap from file PD2HDChannelMap_WIBEth_electronics_v1.txt
SysError in <TFile::TFile>: file /cvmfs/dune.osgstorage.org/pnfs/fnal.gov/usr/dune/persistent/stash/ProtoDUNE/HD/SpaceCharge/Sim_NoFluidFlow/v2/SCE_PDHD_Sim_NoFluidFlow_E500_v2.root can not be opened for reading Input/output error
%MSG-s ArtException:  Early 19-Aug-2024 10:17:41 CEST JobSetup
cet::exception caught in art
---- OtherArt BEGIN
  ServiceCreation
  ---- SpaceChargeProtoDUNEhd BEGIN
    Could not find the space charge effect file '/cvmfs/dune.osgstorage.org/pnfs/fnal.gov/usr/dune/persistent/stash/ProtoDUNE/HD/SpaceCharge/Sim_NoFluidFlow/v2/SCE_PDHD_Sim_NoFluidFlow_E500_v2.root'!
  ---- SpaceChargeProtoDUNEhd END
  cet::exception caught during construction of service type spacecharge::SpaceChargeServiceProtoDUNEhd
---- OtherArt END
%MSG
Art has completed and will exit with status 1.
Error in reco1
justIN time: 2024-11-17 06:07:47 UTC       justIN version: 01.01.09