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Jobsub ID 377287.20@justin-prod-sched01.dune.hep.ac.uk

Jobsub ID377287.20@justin-prod-sched01.dune.hep.ac.uk
Workflow ID6488
Stage ID1
User nameavizcaya@fnal.gov
HTCondor Groupgroup_dune
RequestedProcessors1
GPUNo
RSS bytes4193255424 (3999 MiB)
Wall seconds limit80000 (22 hours)
Submitted time2025-04-29 20:09:42
SiteUK_Edinburgh
EntryDUNE_UK_SGridECDF_ce1
Last heartbeat2025-04-29 20:49:04
From worker nodeHostnamenode2b23.ecdf.ed.ac.uk
cpuinfoIntel(R) Xeon(R) Gold 6338 CPU @ 2.00GHz
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors1
RSS bytes4193255424 (3999 MiB)
Wall seconds limit171000 (47 hours)
GPU
Inner Apptainer?True
Job stateoutputting_failed
Allocator namejustin-allocator-pro.dune.hep.ac.uk
Started2025-04-29 20:12:56
Input filesmonte-carlo-006488-000446
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Max RSS bytes0 (0 MiB)
Outputting started 
Output files
Finished2025-04-29 20:49:04
List job events     Wrapper job log

Jobscript log (last 10,000 characters)

Setting up larsoft UPS area... /cvmfs/larsoft.opensciencegrid.org
Setting up DUNE UPS area... /cvmfs/dune.opensciencegrid.org/products/dune/
Justin processors: 1
did_pfn_rse monte-carlo-006488-000446 000446 MONTECARLO
20 377287
Querying usertests:avizcaya_g4bl_prod_041125-w6387s1p1 for 10 files
Query: files from usertests:avizcaya_g4bl_prod_041125-w6387s1p1 where dune.output_status=confirmed ordered skip 4450 limit 10
Traceback (most recent call last):
  File "/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v37_1_0_post1/NULL/lib/python3.9/site-packages/urllib3/connectionpool.py", line 467, in _make_request
    six.raise_from(e, None)
  File "<string>", line 3, in raise_from
  File "/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v37_1_0_post1/NULL/lib/python3.9/site-packages/urllib3/connectionpool.py", line 462, in _make_request
    httplib_response = conn.getresponse()
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/http/client.py", line 1377, in getresponse
    response.begin()
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/http/client.py", line 320, in begin
    version, status, reason = self._read_status()
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/http/client.py", line 281, in _read_status
    line = str(self.fp.readline(_MAXLINE + 1), "iso-8859-1")
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/socket.py", line 704, in readinto
    return self._sock.recv_into(b)
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/ssl.py", line 1242, in recv_into
    return self.read(nbytes, buffer)
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/ssl.py", line 1100, in read
    return self._sslobj.read(len, buffer)
socket.timeout: The read operation timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/dune.opensciencegrid.org/products/dune/python_requests/v2_25_0/NULL/lib/python3/site-packages/requests/adapters.py", line 439, in send
    resp = conn.urlopen(
  File "/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v37_1_0_post1/NULL/lib/python3.9/site-packages/urllib3/connectionpool.py", line 799, in urlopen
    retries = retries.increment(
  File "/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v37_1_0_post1/NULL/lib/python3.9/site-packages/urllib3/util/retry.py", line 550, in increment
    raise six.reraise(type(error), error, _stacktrace)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v37_1_0_post1/NULL/lib/python3.9/site-packages/urllib3/packages/six.py", line 770, in reraise
    raise value
  File "/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v37_1_0_post1/NULL/lib/python3.9/site-packages/urllib3/connectionpool.py", line 715, in urlopen
    httplib_response = self._make_request(
  File "/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v37_1_0_post1/NULL/lib/python3.9/site-packages/urllib3/connectionpool.py", line 469, in _make_request
    self._raise_timeout(err=e, url=url, timeout_value=read_timeout)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v37_1_0_post1/NULL/lib/python3.9/site-packages/urllib3/connectionpool.py", line 358, in _raise_timeout
    raise ReadTimeoutError(
urllib3.exceptions.ReadTimeoutError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Read timed out. (read timeout=600)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/04714e6ef575ca47529605518ed919ebaf29bea8/merge_g4bl.py", line 55, in <module>
    files = mc.query(query, with_metadata=True)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1318, in query
    results = self.post_json(url, query)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 215, in post_json
    response = self.send_request("post", uri_suffix, data=data, headers=headers, stream=True)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
    self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 133, in retry_request
    response = requests.post(url, timeout=self.Timeout, **args)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/python_requests/v2_25_0/NULL/lib/python3/site-packages/requests/api.py", line 119, in post
    return request('post', url, data=data, json=json, **kwargs)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/python_requests/v2_25_0/NULL/lib/python3/site-packages/requests/api.py", line 61, in request
    return session.request(method=method, url=url, **kwargs)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/python_requests/v2_25_0/NULL/lib/python3/site-packages/requests/sessions.py", line 542, in request
    resp = self.send(prep, **send_kwargs)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/python_requests/v2_25_0/NULL/lib/python3/site-packages/requests/sessions.py", line 655, in send
    r = adapter.send(request, **kwargs)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/python_requests/v2_25_0/NULL/lib/python3/site-packages/requests/adapters.py", line 529, in send
    raise ReadTimeout(e, request=request)
requests.exceptions.ReadTimeout: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Read timed out. (read timeout=600)
Exiting with error
justIN time: 2025-05-23 00:07:37 UTC       justIN version: 01.03.01