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Jobsub ID 360130.0@justin-prod-sched01.dune.hep.ac.uk

Jobsub ID360130.0@justin-prod-sched01.dune.hep.ac.uk
Workflow ID5874
Stage ID1
User nameykermaid@fnal.gov
HTCondor Groupgroup_dune.prod_mcsim
RequestedProcessors1
GPUNo
RSS bytes4193255424 (3999 MiB)
Wall seconds limit18000 (5 hours)
Submitted time2025-04-02 03:44:23
SiteNL_SURFsara
EntryDUNE_SurfSARA_arc02
Last heartbeat2025-04-02 04:16:28
From worker nodeHostnamewn-da-19.gina.surf.nl
cpuinfoAMD EPYC 7702P 64-Core Processor
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors1
RSS bytes4193255424 (3999 MiB)
Wall seconds limit129600 (36 hours)
GPU
Inner Apptainer?True
Job statefinished
Allocator namejustin-allocator-pro.dune.hep.ac.uk
Started2025-04-02 03:45:58
Input filesvd-protodune:np02vd_raw_run035707_0138_df-s04-d0_dw_0_20250402T025127.hdf5
JobscriptExit code0
Real time28m (1726s)
CPU time3m (220s = 12%)
Max RSS bytes917753856 (875 MiB)
Outputting started2025-04-02 04:14:45
Output filesvd-protodune-det-reco:np02vd_raw_run035707_0138_df-s04-d0_dw_0_20250402T025127_reco_stage1_20250402T041435_keepup.root
Finished2025-04-02 04:16:28
Saved logsjustin-logs:360130.0-justin-prod-sched01.dune.hep.ac.uk.logs.tgz
List job events     Wrapper job log

Jobscript log (last 10,000 characters)

d.org/products/wirecell/v0_29_5/Linux64bit+3.10-2.17-e26-prof/lib
TRITON_INC=/cvmfs/larsoft.opensciencegrid.org/products/triton/v2_25_0d/Linux64bit+3.10-2.17-e26/include
LIBJPEG_TURBO_INC=/cvmfs/larsoft.opensciencegrid.org/products/libjpeg_turbo/v2_1_0/Linux64bit+3.10-2.17/include
LAREVENTDISPLAY_LIB=/cvmfs/larsoft.opensciencegrid.org/products/lareventdisplay/v10_00_06/slf7.x86_64.e26.prof/lib
PPFX_VERSION=v02_20_04
NUG4_VERSION=v1_16_06
SETUP_LARDATAALG=lardataalg v10_00_02 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
LARCOREALG_INC=/cvmfs/larsoft.opensciencegrid.org/products/larcorealg/v10_00_00/include
G4PARTICLEHPDATA=/cvmfs/larsoft.opensciencegrid.org/products/g4tendl/v1_3_2/G4TENDL1.3.2
SETUP_LARANA=larana v10_00_06 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_LARSOFT=larsoft v10_03_01 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_CETLIB=cetlib v3_18_02 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_FHICLCPP=fhiclcpp v4_18_04 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
OPENBLAS_INC=/cvmfs/larsoft.opensciencegrid.org/products/openblas/v0_3_23/Linux64bit+3.10-2.17-e26/include
PYTHON_INCLUDE=/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/include/python3.9
_=/usr/bin/env
Will use justin-get-file
pfn: root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/a6/cb/np02vd_raw_run035707_0138_df-s04-d0_dw_0_20250402T025127.hdf5
did: vd-protodune:np02vd_raw_run035707_0138_df-s04-d0_dw_0_20250402T025127.hdf5
Running reco stage1
The following paths have not been enabled for execution and will be ignored:
  read_tpc
The following module labels are either not assigned to any path,
or they have been assigned to ignored path(s):
  emtrkmichelid
  gaushit
  hitpdune
  nhitsfilter
  opflash
  ophit
  opslicer
  pandora
  pandoraGnocalo
  pandoraShower
  pandoraStdcalo
  pandoraTrack
  pandoraWriter
  pandoracalipid
  pandorapid
  pdhddaphne
  reco3d
  rns
  wclsdatavd
Info in <TGeoManager::Import>: Reading geometry from file: /cvmfs/dune.opensciencegrid.org/products/dune/dunecore/v10_03_01d01/gdml/protodunevd_v4_refactored.gdml
Info in <TGeoManager::TGeoManager>: Geometry GDMLImport, Geometry imported from GDML created
Error: Unsupported GDML Tag Used :gdml_simple_extension. Please Check Geometry/Schema.
Error: Unsupported GDML Tag Used :extension. Please Check Geometry/Schema.
Error: Unsupported GDML Tag Used :color. Please Check Geometry/Schema.
Error: Unsupported GDML Tag Used :color. Please Check Geometry/Schema.
Error: Unsupported GDML Tag Used :color. Please Check Geometry/Schema.
Error: Unsupported GDML Tag Used :color. Please Check Geometry/Schema.
Error: Unsupported GDML Tag Used :color. Please Check Geometry/Schema.
Error: Unsupported GDML Tag Used :color. Please Check Geometry/Schema.
Info in <TGeoManager::SetTopVolume>: Top volume is volWorld. Master volume is volWorld
Info in <TGeoNavigator::BuildCache>: --- Maximum geometry depth set to 100
Info in <TGeoManager::CheckGeometry>: Fixing runtime shapes...
Info in <TGeoManager::CheckGeometry>: ...Nothing to fix
Info in <TGeoManager::CloseGeometry>: Counting nodes...
Info in <TGeoManager::Voxelize>: Voxelizing...
Info in <TGeoManager::CloseGeometry>: Building cache...
Info in <TGeoManager::CountLevels>: max level = 5, max placements = 292
Info in <TGeoManager::CloseGeometry>: 16451 nodes/ 2412 volume UID's in Geometry imported from GDML
Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------
GeoApaChannelGroupService::ctor: Group 0 (apa0) has 3072 channels from 3/3 readout planes.
GeoApaChannelGroupService::ctor: Group 1 (apa1) has 3072 channels from 3/3 readout planes.
GeoApaChannelGroupService::ctor: Group 2 (apa2) has 3072 channels from 3/3 readout planes.
GeoApaChannelGroupService::ctor: Group 3 (apa3) has 3072 channels from 3/3 readout planes.
DAPHNE Channel Map: Building DAPHNE channel map from file DAPHNE_vd_coldbox_ChannelMap_bde2.txt
PDVD Channel Map: Building TPC wiremap from file PD2VDBottomTPCChannelMap_v1.txt
PDSP Channel Map: Building RCE TPC wiremap from file protoDUNETPCChannelMap_RCE_v4.txt
PDSP Channel Map: Building FELIX TPC wiremap from file protoDUNETPCChannelMap_RCE_v4.txt
PDSP Channel Map: Building SSP channel map from file protoDUNESSPChannelMap_v1.txt
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_U (Potential memory leak).
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_V (Potential memory leak).
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_Y (Potential memory leak).
db: runtime1743562287
02-Apr-2025 05:46:34 CEST  Opened output file with pattern "%ifb_reco_stage1_%tc_keepup.root"
02-Apr-2025 06:14:35 CEST  Closed output file "np02vd_raw_run035707_0138_df-s04-d0_dw_0_20250402T025127_reco_stage1_20250402T041435_keepup.root"

================================================================================================================================
TimeTracker printout (sec)                        Min           Avg           Max         Median          RMS         nEvts   
================================================================================================================================
Full event                                      11.2197       38.0298       59.9313       35.1758       11.4702        44     
--------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read)                    1.2775e-05    1.82855e-05   0.000169607   1.3777e-05    2.34446e-05      44     
produce:tpcrawdecoder:PDVDTPCReader             9.2372        36.1454       58.0323       33.2857       11.4613        44     
[art]:TriggerResults:TriggerResultInserter    1.2183e-05    1.40235e-05   4.0267e-05    1.34115e-05   4.08886e-06      44     
end_path:out1:RootOutput                       3.226e-06    4.14059e-06   1.6853e-05     3.792e-06    1.9637e-06       44     
end_path:out1:RootOutput(write)                 1.80873       1.88397       1.99776        1.892       0.0442966       44     
================================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 1652.95 MB
  Peak resident set size usage (VmHWM): 917.754 MB
  Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run035707_0138_df-s04-d0_dw_0_20250402T025127_reco_stage1_20250402T041435_keepup.root
\tHists: np02vd_raw_run035707_0138_df-s04-d0_dw_0_20250402T025127_reco_stage1_20250402T041435_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run035707_0138_df-s04-d0_dw_0_20250402T025127_reco_stage1_20250402T041435_keepup.root
Ran successfully
{
  "name": "np02vd_raw_run035707_0138_df-s04-d0_dw_0_20250402T025127_reco_stage1_20250402T041435_keepup.root",
  "namespace": "vd-protodune-det-reco",
  "metadata": {
    "core.file_format": "artroot",
    "core.application.name": "reco",
    "core.application.family": "dunesw",
    "core.application.version": "v10_03_01d01",
    "core.data_tier": "full-reconstructed",
    "dune.config_file": "standard_reco_stage1_protodunevd_keepup.fcl",
    "dune.campaign": "vd-protodune-reco-keepup-v0",
    "core.start_time": 1743567275.0,
    "core.end_time": 1743567275.0,
    "core.events": [
      6073,
      6074,
      6075,
      6076,
      6077,
      6078,
      6079,
      6080,
      6081,
      6082,
      6083,
      6084,
      6085,
      6086,
      6087,
      6088,
      6089,
      6090,
      6091,
      6092,
      6093,
      6094,
      6095,
      6096,
      6097,
      6098,
      6099,
      6100,
      6101,
      6102,
      6103,
      6104,
      6105,
      6106,
      6107,
      6108,
      6109,
      6110,
      6111,
      6112,
      6113,
      6114,
      6115,
      6116
    ],
    "core.event_count": 44,
    "core.first_event_number": 6073,
    "core.last_event_number": 6116,
    "core.data_stream": "cosmics",
    "core.file_content_status": "good",
    "core.file_type": "detector",
    "core.run_type": "vd-protodune",
    "core.runs": [
      35707
    ],
    "core.runs_subruns": [
      3570700001
    ],
    "dune.daq_test": true,
    "retention.status": "active",
    "retention.class": "physics"
  },
  "parents": [
    {
      "did": "vd-protodune:np02vd_raw_run035707_0138_df-s04-d0_dw_0_20250402T025127.hdf5"
    }
  ]
}Forming hist metadata
formed
{
  "name": "np02vd_raw_run035707_0138_df-s04-d0_dw_0_20250402T025127_reco_stage1_20250402T041435_keepup_hists.root",
  "namespace": "vd-protodune-det-reco",
  "metadata": {
    "core.file_format": "root",
    "core.application.name": "reco",
    "core.application.family": "dunesw",
    "core.application.version": "v10_03_01d01",
    "core.data_tier": "root-tuple-virtual",
    "dune.config_file": "standard_reco_stage1_protodunevd_keepup.fcl",
    "dune.campaign": "vd-protodune-reco-keepup-v0",
    "core.start_time": 1743567275.0,
    "core.end_time": 1743567275.0,
    "core.data_stream": "cosmics",
    "core.file_content_status": "good",
    "core.file_type": "detector",
    "core.run_type": "vd-protodune",
    "core.runs": [
      35707
    ],
    "core.runs_subruns": [
      3570700001
    ],
    "dune.daq_test": true,
    "retention.status": "active",
    "retention.class": "physics"
  },
  "parents": [
    {
      "did": "vd-protodune:np02vd_raw_run035707_0138_df-s04-d0_dw_0_20250402T025127.hdf5"
    }
  ]
}
justIN time: 2025-04-03 07:45:54 UTC       justIN version: 01.03.00