Jobsub ID 301218.8@justin-prod-sched01.dune.hep.ac.uk
| Jobsub ID | 301218.8@justin-prod-sched01.dune.hep.ac.uk | |
| Workflow ID | 4201 | |
| Stage ID | 1 | |
| User name | calcuttj@fnal.gov | |
| HTCondor Group | group_dune | |
| Requested | Processors | 1 |
| RSS bytes | 2096103424 (1999 MiB) | |
| Wall seconds limit | 80000 (22 hours) | |
| Submitted time | 2024-11-22 17:02:17 | |
| Site | CA_SFU | |
| Entry | DUNE_CA_SFU_lcg-ce3 | |
| Last heartbeat | 2024-11-22 21:57:05 | |
| From worker node | Hostname | cdr1183.int.cedar.computecanada.ca |
| cpuinfo | Intel(R) Xeon(R) Platinum 8160 CPU @ 2.10GHz | |
| OS release | Scientific Linux release 7.9 (Nitrogen) | |
| Processors | 1 | |
| RSS bytes | 2096103424 (1999 MiB) | |
| Wall seconds limit | 84598 (23 hours) | |
| Inner Apptainer? | True | |
| Job state | jobscript_error | |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk | |
| Started | 2024-11-22 17:22:15 | |
| Input files | hd-protodune:np04hd_raw_run028023_0347_dataflow0_datawriter_0_20240716T205353.hdf5 hd-protodune:np04hd_raw_run028023_0350_dataflow7_datawriter_0_20240716T205544.hdf5 hd-protodune:np04hd_raw_run028023_0359_dataflow1_datawriter_0_20240716T210102.hdf5 hd-protodune:np04hd_raw_run028023_0351_dataflow2_datawriter_0_20240716T205615.hdf5 hd-protodune:np04hd_raw_run028023_0351_dataflow6_datawriter_0_20240716T205615.hdf5 | |
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) | |
| CPU time | 0m (0s = 0%) | |
| Outputting started | ||
| Output files | ||
| Finished | 2024-11-22 21:57:05 | |
| Saved logs | justin-logs:301218.8-justin-prod-sched01.dune.hep.ac.uk.logs.tgz | |
| List job events Wrapper job log | ||
Jobscript log (last 10,000 characters)
NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
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WARNING: NONZERO HALF
%MSG-w BeamEvent: BeamEvent:beamevent@BeginModule 22-Nov-2024 13:56:10 PST run: 28023 subRun: 1 event: 94969 BeamEvent_module.cc:1828
Could not get XCET1 info
%MSG
%MSG-w BeamEvent: BeamEvent:beamevent@BeginModule 22-Nov-2024 13:56:10 PST run: 28023 subRun: 1 event: 94969 BeamEvent_module.cc:1846
Could not get XCET2 info
%MSG
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 96.0694 0.986057
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 99.5371 0.990981
Timing trigger: 12
Matched: 1
CKovs: 0 0
TOF, P: -1 1.13508
Timing trigger: 12
Matched: 1
CKovs: 0 0
TOF, P: 95.1768 1.04111
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 95.9873 0.977753
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 95.6484 0.999237
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 94.5156 0.896471
Timing trigger: 12
Matched: 1
CKovs: 1 0
TOF, P: 96.6213 -1
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 96.6338 0.972721
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5F.c line 620 in H5Fopen(): unable to open file
major: File accessibility
minor: Unable to open file
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 3501 in H5VL_file_open(): failed to iterate over available VOL connector plugins
major: Virtual Object Layer
minor: Iteration failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PLpath.c line 578 in H5PL__path_table_iterate(): can't iterate over plugins in plugin path '(null)'
major: Plugin for dynamically loaded library
minor: Iteration failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PLpath.c line 620 in H5PL__path_table_iterate_process_path(): can't open directory: /usr/local/hdf5/lib/plugin
major: Plugin for dynamically loaded library
minor: Can't open directory or file
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 3351 in H5VL__file_open(): open failed
major: Virtual Object Layer
minor: Can't open object
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_file.c line 97 in H5VL__native_file_open(): unable to open file
major: File accessibility
minor: Unable to open file
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fint.c line 1834 in H5F_open(): unable to open file: name = 'root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/38/89/np04hd_raw_run028023_0351_dataflow2_datawriter_0_20240716T205615.hdf5', tent_flags = 0
major: File accessibility
minor: Unable to open file
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FD.c line 723 in H5FD_open(): open failed
major: Virtual File Layer
minor: Unable to initialize object
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 352 in H5FD__sec2_open(): unable to open file: name = 'root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/38/89/np04hd_raw_run028023_0351_dataflow2_datawriter_0_20240716T205615.hdf5', errno = 52, error message = 'Invalid exchange', flags = 0, o_flags = 0
major: File accessibility
minor: Unable to open file
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 2.68788 163.525 8654.52 3.06974 938.101 99
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 1.6031e-05 1.94269e-05 0.000103639 1.7969e-05 8.75736e-06 99
produce:triggerrawdecoder:PDHDTriggerReader3 2.08523 3.08863 57.2397 2.37322 5.53356 99
produce:ctbrawdecoder:PDHDCTBRawDecoder 0.361862 0.456322 0.660529 0.436647 0.0587925 99
produce:timingrawdecoder:PDHDTimingRawDecoder 0.072372 0.0730896 0.107329 0.072613 0.00350429 99
produce:beamevent:BeamEvent 0.000213458 159.785 8651.56 0.00138048 938.209 99
[art]:TriggerResults:TriggerResultInserter 1.2914e-05 1.64353e-05 6.1247e-05 1.5425e-05 5.78044e-06 99
end_path:out1:RootOutput 2.587e-06 3.39097e-06 1.678e-05 3.178e-06 1.49592e-06 99
end_path:out1:RootOutput(write) 0.0735285 0.121632 0.179108 0.11875 0.0206811 99
===================================================================================================================================
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 2.68788 163.525 8654.52 3.06974 938.101 99
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 1.6031e-05 1.94269e-05 0.000103639 1.7969e-05 8.75736e-06 99
produce:triggerrawdecoder:PDHDTriggerReader3 2.08523 3.08863 57.2397 2.37322 5.53356 99
produce:ctbrawdecoder:PDHDCTBRawDecoder 0.361862 0.456322 0.660529 0.436647 0.0587925 99
produce:timingrawdecoder:PDHDTimingRawDecoder 0.072372 0.0730896 0.107329 0.072613 0.00350429 99
produce:beamevent:BeamEvent 0.000213458 159.785 8651.56 0.00138048 938.209 99
[art]:TriggerResults:TriggerResultInserter 1.2914e-05 1.64353e-05 6.1247e-05 1.5425e-05 5.78044e-06 99
end_path:out1:RootOutput 2.587e-06 3.39097e-06 1.678e-05 3.178e-06 1.49592e-06 99
end_path:out1:RootOutput(write) 0.0735285 0.121632 0.179108 0.11875 0.0206811 99
===================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 1532.19 MB
Peak resident set size usage (VmHWM): 579.281 MB
====================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 1532.19 MB
Peak resident set size usage (VmHWM): 579.281 MB
====================================================================================================
TrigReport ---------- Event summary -------------
TrigReport Events total = 99 passed = 99 failed = 0
TrigReport ---------- Modules in End-path ----------
TrigReport Run Success Error Name
TrigReport 99 99 0 out1
TimeReport ---------- Time summary [sec] -------
TimeReport CPU = 24.255389 Real = 16462.580298
MemReport ---------- Memory summary [base-10 MB] ------
MemReport VmPeak = 1532.19 VmHWM = 579.281
%MSG-s ArtException: PostEndJob 22-Nov-2024 13:56:49 PST ModuleEndJob
---- HDF5RawDataFile BEGIN
File open failure: root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/38/89/np04hd_raw_run028023_0351_dataflow2_datawriter_0_20240716T205615.hdf5 Unable to open file root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/38/89/np04hd_raw_run028023_0351_dataflow2_datawriter_0_20240716T205615.hdf5 (File accessibility) Unable to open file
---- HDF5RawDataFile END
%MSG
%MSG-s ArtException: PostEndJob 22-Nov-2024 13:56:49 PST ModuleEndJob
---- HDF5RawDataFile BEGIN
File open failure: root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/38/89/np04hd_raw_run028023_0351_dataflow2_datawriter_0_20240716T205615.hdf5 Unable to open file root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/38/89/np04hd_raw_run028023_0351_dataflow2_datawriter_0_20240716T205615.hdf5 (File accessibility) Unable to open file
---- HDF5RawDataFile END
%MSG
Art has completed and will exit with status 1.