Jobsub ID 301218.2@justin-prod-sched01.dune.hep.ac.uk
| Jobsub ID | 301218.2@justin-prod-sched01.dune.hep.ac.uk | |
| Workflow ID | 4201 | |
| Stage ID | 1 | |
| User name | calcuttj@fnal.gov | |
| HTCondor Group | group_dune | |
| Requested | Processors | 1 |
| RSS bytes | 2096103424 (1999 MiB) | |
| Wall seconds limit | 80000 (22 hours) | |
| Submitted time | 2024-11-22 17:02:17 | |
| Site | CA_SFU | |
| Entry | DUNE_CA_SFU_lcg-ce3 | |
| Last heartbeat | 2024-11-22 21:52:38 | |
| From worker node | Hostname | cdr939.int.cedar.computecanada.ca |
| cpuinfo | Intel(R) Xeon(R) CPU E5-2683 v4 @ 2.10GHz | |
| OS release | Scientific Linux release 7.9 (Nitrogen) | |
| Processors | 1 | |
| RSS bytes | 2096103424 (1999 MiB) | |
| Wall seconds limit | 84598 (23 hours) | |
| Inner Apptainer? | True | |
| Job state | jobscript_error | |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk | |
| Started | 2024-11-22 17:20:47 | |
| Input files | hd-protodune:np04hd_raw_run028023_0239_dataflow2_datawriter_0_20240716T194723.hdf5 hd-protodune:np04hd_raw_run028023_0239_dataflow6_datawriter_0_20240716T194724.hdf5 hd-protodune:np04hd_raw_run028023_0240_dataflow2_datawriter_0_20240716T194833.hdf5 hd-protodune:np04hd_raw_run028023_0240_dataflow0_datawriter_0_20240716T194833.hdf5 hd-protodune:np04hd_raw_run028023_0239_dataflow0_datawriter_0_20240716T194724.hdf5 | |
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) | |
| CPU time | 0m (0s = 0%) | |
| Outputting started | ||
| Output files | ||
| Finished | 2024-11-22 21:52:38 | |
| Saved logs | justin-logs:301218.2-justin-prod-sched01.dune.hep.ac.uk.logs.tgz | |
| List job events Wrapper job log | ||
Jobscript log (last 10,000 characters)
NG: NONZERO HALF
WARNING: NONZERO HALF
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%MSG-w BeamEvent: BeamEvent:beamevent@BeginModule 22-Nov-2024 13:51:56 PST run: 28023 subRun: 1 event: 63584 BeamEvent_module.cc:1828
Could not get XCET1 info
%MSG
%MSG-w BeamEvent: BeamEvent:beamevent@BeginModule 22-Nov-2024 13:51:56 PST run: 28023 subRun: 1 event: 63584 BeamEvent_module.cc:1846
Could not get XCET2 info
%MSG
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 151.785 -1
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 94.5957 -1
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 353.715 0.920606
Timing trigger: 12
Matched: 1
CKovs: 0 0
TOF, P: 96.6338 1.05353
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 96.375 1.00005
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 95.8906 1.04461
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5F.c line 620 in H5Fopen(): unable to open file
major: File accessibility
minor: Unable to open file
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 3501 in H5VL_file_open(): failed to iterate over available VOL connector plugins
major: Virtual Object Layer
minor: Iteration failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PLpath.c line 578 in H5PL__path_table_iterate(): can't iterate over plugins in plugin path '(null)'
major: Plugin for dynamically loaded library
minor: Iteration failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PLpath.c line 620 in H5PL__path_table_iterate_process_path(): can't open directory: /usr/local/hdf5/lib/plugin
major: Plugin for dynamically loaded library
minor: Can't open directory or file
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 3351 in H5VL__file_open(): open failed
major: Virtual Object Layer
minor: Can't open object
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_file.c line 97 in H5VL__native_file_open(): unable to open file
major: File accessibility
minor: Unable to open file
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fint.c line 1834 in H5F_open(): unable to open file: name = 'root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/c8/c2/np04hd_raw_run028023_0239_dataflow0_datawriter_0_20240716T194724.hdf5', tent_flags = 0
major: File accessibility
minor: Unable to open file
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FD.c line 723 in H5FD_open(): open failed
major: Virtual File Layer
minor: Unable to initialize object
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 352 in H5FD__sec2_open(): unable to open file: name = 'root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/c8/c2/np04hd_raw_run028023_0239_dataflow0_datawriter_0_20240716T194724.hdf5', errno = 52, error message = 'Invalid exchange', flags = 0, o_flags = 0
major: File accessibility
minor: Unable to open file
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 2.63561 121.294 6820.03 2.93281 756.689 132
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 1.6717e-05 2.03266e-05 0.000113594 1.8794e-05 8.67712e-06 132
produce:triggerrawdecoder:PDHDTriggerReader3 2.01456 2.31488 3.2055 2.27375 0.18681 132
produce:ctbrawdecoder:PDHDCTBRawDecoder 0.361578 0.448448 0.664687 0.435606 0.0584879 132
produce:timingrawdecoder:PDHDTimingRawDecoder 0.0723485 0.0727615 0.0793211 0.072569 0.000871345 132
produce:beamevent:BeamEvent 0.000196265 118.337 6817.22 0.00100348 756.685 132
[art]:TriggerResults:TriggerResultInserter 1.4448e-05 1.6987e-05 5.5878e-05 1.62125e-05 4.2253e-06 132
end_path:out1:RootOutput 2.512e-06 3.2091e-06 1.6774e-05 3.024e-06 1.25958e-06 132
end_path:out1:RootOutput(write) 0.0623896 0.12003 0.185871 0.119421 0.0230867 132
===================================================================================================================================
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 2.63561 121.294 6820.03 2.93281 756.689 132
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 1.6717e-05 2.03266e-05 0.000113594 1.8794e-05 8.67712e-06 132
produce:triggerrawdecoder:PDHDTriggerReader3 2.01456 2.31488 3.2055 2.27375 0.18681 132
produce:ctbrawdecoder:PDHDCTBRawDecoder 0.361578 0.448448 0.664687 0.435606 0.0584879 132
produce:timingrawdecoder:PDHDTimingRawDecoder 0.0723485 0.0727615 0.0793211 0.072569 0.000871345 132
produce:beamevent:BeamEvent 0.000196265 118.337 6817.22 0.00100348 756.685 132
[art]:TriggerResults:TriggerResultInserter 1.4448e-05 1.6987e-05 5.5878e-05 1.62125e-05 4.2253e-06 132
end_path:out1:RootOutput 2.512e-06 3.2091e-06 1.6774e-05 3.024e-06 1.25958e-06 132
end_path:out1:RootOutput(write) 0.0623896 0.12003 0.185871 0.119421 0.0230867 132
===================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 1490.7 MB
Peak resident set size usage (VmHWM): 526.717 MB
====================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 1490.7 MB
Peak resident set size usage (VmHWM): 526.717 MB
====================================================================================================
TrigReport ---------- Event summary -------------
TrigReport Events total = 132 passed = 132 failed = 0
TrigReport ---------- Modules in End-path ----------
TrigReport Run Success Error Name
TrigReport 132 132 0 out1
TimeReport ---------- Time summary [sec] -------
TimeReport CPU = 24.323086 Real = 16274.550285
MemReport ---------- Memory summary [base-10 MB] ------
MemReport VmPeak = 1490.7 VmHWM = 526.717
%MSG-s ArtException: PostEndJob 22-Nov-2024 13:52:24 PST ModuleEndJob
---- HDF5RawDataFile BEGIN
File open failure: root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/c8/c2/np04hd_raw_run028023_0239_dataflow0_datawriter_0_20240716T194724.hdf5 Unable to open file root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/c8/c2/np04hd_raw_run028023_0239_dataflow0_datawriter_0_20240716T194724.hdf5 (File accessibility) Unable to open file
---- HDF5RawDataFile END
%MSG
%MSG-s ArtException: PostEndJob 22-Nov-2024 13:52:24 PST ModuleEndJob
---- HDF5RawDataFile BEGIN
File open failure: root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/c8/c2/np04hd_raw_run028023_0239_dataflow0_datawriter_0_20240716T194724.hdf5 Unable to open file root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/c8/c2/np04hd_raw_run028023_0239_dataflow0_datawriter_0_20240716T194724.hdf5 (File accessibility) Unable to open file
---- HDF5RawDataFile END
%MSG
Art has completed and will exit with status 1.