Jobsub ID 298944.125@justin-prod-sched01.dune.hep.ac.uk
| Jobsub ID | 298944.125@justin-prod-sched01.dune.hep.ac.uk | |
| Workflow ID | 4201 | |
| Stage ID | 1 | |
| User name | calcuttj@fnal.gov | |
| HTCondor Group | group_dune | |
| Requested | Processors | 1 |
| RSS bytes | 2096103424 (1999 MiB) | |
| Wall seconds limit | 80000 (22 hours) | |
| Submitted time | 2024-11-21 15:11:20 | |
| Site | CA_SFU | |
| Entry | DUNE_CA_SFU_lcg-ce3 | |
| Last heartbeat | 2024-11-21 17:55:38 | |
| From worker node | Hostname | cdr949.int.cedar.computecanada.ca |
| cpuinfo | Intel(R) Xeon(R) CPU E5-2683 v4 @ 2.10GHz | |
| OS release | Scientific Linux release 7.9 (Nitrogen) | |
| Processors | 1 | |
| RSS bytes | 2096103424 (1999 MiB) | |
| Wall seconds limit | 84598 (23 hours) | |
| Inner Apptainer? | True | |
| Job state | jobscript_error | |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk | |
| Started | 2024-11-21 16:15:35 | |
| Input files | hd-protodune:np04hd_raw_run028023_0846_dataflow1_datawriter_0_20240717T015855.hdf5 hd-protodune:np04hd_raw_run028023_0803_dataflow5_datawriter_0_20240717T013057.hdf5 hd-protodune:np04hd_raw_run028023_0846_dataflow2_datawriter_0_20240717T015855.hdf5 hd-protodune:np04hd_raw_run028023_0802_dataflow5_datawriter_0_20240717T013022.hdf5 hd-protodune:np04hd_raw_run028023_0829_dataflow2_datawriter_0_20240717T014759.hdf5 | |
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) | |
| CPU time | 0m (0s = 0%) | |
| Outputting started | ||
| Output files | ||
| Finished | 2024-11-21 17:55:38 | |
| Saved logs | justin-logs:298944.125-justin-prod-sched01.dune.hep.ac.uk.logs.tgz | |
| List job events Wrapper job log | ||
Jobscript log (last 10,000 characters)
NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
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%MSG-w BeamEvent: BeamEvent:beamevent@BeginModule 21-Nov-2024 09:55:08 PST run: 28023 subRun: 1 event: 212237 BeamEvent_module.cc:1828
Could not get XCET1 info
%MSG
%MSG-w BeamEvent: BeamEvent:beamevent@BeginModule 21-Nov-2024 09:55:08 PST run: 28023 subRun: 1 event: 212237 BeamEvent_module.cc:1846
Could not get XCET2 info
%MSG
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 94.1875 0.98749
%MSG-w HDF5FileLayout.cpp: PostProcessEvent 21-Nov-2024 09:55:08 PST run: 28023 subRun: 1 event: 212237 HDF5FileLayout.cpp:70
File Layout Not Enough Digits For Path 212245 5
%MSG
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 94.9346 1.0773
%MSG-w HDF5FileLayout.cpp: PostProcessEvent 21-Nov-2024 09:55:13 PST run: 28023 subRun: 1 event: 212245 HDF5FileLayout.cpp:70
File Layout Not Enough Digits For Path 212253 5
%MSG
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 96.0674 0.90388
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5F.c line 620 in H5Fopen(): unable to open file
major: File accessibility
minor: Unable to open file
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 3501 in H5VL_file_open(): failed to iterate over available VOL connector plugins
major: Virtual Object Layer
minor: Iteration failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PLpath.c line 578 in H5PL__path_table_iterate(): can't iterate over plugins in plugin path '(null)'
major: Plugin for dynamically loaded library
minor: Iteration failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PLpath.c line 620 in H5PL__path_table_iterate_process_path(): can't open directory: /usr/local/hdf5/lib/plugin
major: Plugin for dynamically loaded library
minor: Can't open directory or file
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 3351 in H5VL__file_open(): open failed
major: Virtual Object Layer
minor: Can't open object
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_file.c line 97 in H5VL__native_file_open(): unable to open file
major: File accessibility
minor: Unable to open file
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fint.c line 1834 in H5F_open(): unable to open file: name = 'root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/0a/5e/np04hd_raw_run028023_0846_dataflow2_datawriter_0_20240717T015855.hdf5', tent_flags = 0
major: File accessibility
minor: Unable to open file
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FD.c line 723 in H5FD_open(): open failed
major: Virtual File Layer
minor: Unable to initialize object
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 352 in H5FD__sec2_open(): unable to open file: name = 'root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/0a/5e/np04hd_raw_run028023_0846_dataflow2_datawriter_0_20240717T015855.hdf5', errno = 52, error message = 'Invalid exchange', flags = 0, o_flags = 0
major: File accessibility
minor: Unable to open file
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 2.66961 88.4404 5134.04 3.01313 628.843 66
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 1.8651e-05 2.32541e-05 0.000118847 2.1518e-05 1.20864e-05 66
produce:triggerrawdecoder:PDHDTriggerReader3 2.0303 2.42645 3.2018 2.35883 0.274755 66
produce:ctbrawdecoder:PDHDCTBRawDecoder 0.362459 0.456898 0.590748 0.437465 0.0580904 66
produce:timingrawdecoder:PDHDTimingRawDecoder 0.0724421 0.0728681 0.0807683 0.0727194 0.00099259 66
produce:beamevent:BeamEvent 0.000249559 85.3711 5130.98 0.00115365 628.836 66
[art]:TriggerResults:TriggerResultInserter 1.6121e-05 2.22305e-05 0.000115676 1.9849e-05 1.20506e-05 66
end_path:out1:RootOutput 2.933e-06 4.11871e-06 2.6168e-05 3.6905e-06 2.86317e-06 66
end_path:out1:RootOutput(write) 0.0779089 0.112667 0.155169 0.111056 0.0159342 66
===================================================================================================================================
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 2.66961 88.4404 5134.04 3.01313 628.843 66
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 1.8651e-05 2.32541e-05 0.000118847 2.1518e-05 1.20864e-05 66
produce:triggerrawdecoder:PDHDTriggerReader3 2.0303 2.42645 3.2018 2.35883 0.274755 66
produce:ctbrawdecoder:PDHDCTBRawDecoder 0.362459 0.456898 0.590748 0.437465 0.0580904 66
produce:timingrawdecoder:PDHDTimingRawDecoder 0.0724421 0.0728681 0.0807683 0.0727194 0.00099259 66
produce:beamevent:BeamEvent 0.000249559 85.3711 5130.98 0.00115365 628.836 66
[art]:TriggerResults:TriggerResultInserter 1.6121e-05 2.22305e-05 0.000115676 1.9849e-05 1.20506e-05 66
end_path:out1:RootOutput 2.933e-06 4.11871e-06 2.6168e-05 3.6905e-06 2.86317e-06 66
end_path:out1:RootOutput(write) 0.0779089 0.112667 0.155169 0.111056 0.0159342 66
===================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 1540.92 MB
Peak resident set size usage (VmHWM): 596.079 MB
====================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 1540.92 MB
Peak resident set size usage (VmHWM): 596.079 MB
====================================================================================================
TrigReport ---------- Event summary -------------
TrigReport Events total = 66 passed = 66 failed = 0
TrigReport ---------- Modules in End-path ----------
TrigReport Run Success Error Name
TrigReport 66 66 0 out1
TimeReport ---------- Time summary [sec] -------
TimeReport CPU = 13.736731 Real = 5973.596585
MemReport ---------- Memory summary [base-10 MB] ------
MemReport VmPeak = 1540.92 VmHWM = 596.079
%MSG-s ArtException: PostEndJob 21-Nov-2024 09:55:19 PST ModuleEndJob
---- HDF5RawDataFile BEGIN
File open failure: root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/0a/5e/np04hd_raw_run028023_0846_dataflow2_datawriter_0_20240717T015855.hdf5 Unable to open file root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/0a/5e/np04hd_raw_run028023_0846_dataflow2_datawriter_0_20240717T015855.hdf5 (File accessibility) Unable to open file
---- HDF5RawDataFile END
%MSG
%MSG-s ArtException: PostEndJob 21-Nov-2024 09:55:19 PST ModuleEndJob
---- HDF5RawDataFile BEGIN
File open failure: root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/0a/5e/np04hd_raw_run028023_0846_dataflow2_datawriter_0_20240717T015855.hdf5 Unable to open file root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/0a/5e/np04hd_raw_run028023_0846_dataflow2_datawriter_0_20240717T015855.hdf5 (File accessibility) Unable to open file
---- HDF5RawDataFile END
%MSG
Art has completed and will exit with status 1.