Jobsub ID 298892.72@justin-prod-sched01.dune.hep.ac.uk
| Jobsub ID | 298892.72@justin-prod-sched01.dune.hep.ac.uk | |
| Workflow ID | 4201 | |
| Stage ID | 1 | |
| User name | calcuttj@fnal.gov | |
| HTCondor Group | group_dune | |
| Requested | Processors | 1 |
| RSS bytes | 2096103424 (1999 MiB) | |
| Wall seconds limit | 80000 (22 hours) | |
| Submitted time | 2024-11-21 14:44:04 | |
| Site | US_FNAL-T1 | |
| Entry | CMSHTPC_T1_US_FNAL_condce_opp1_whole | |
| Last heartbeat | 2024-11-21 15:54:42 | |
| From worker node | Hostname | dunegli-36992-0-cmswn4057.fnal.gov |
| cpuinfo | AMD EPYC 7543 32-Core Processor | |
| OS release | Scientific Linux release 7.9 (Nitrogen) | |
| Processors | 1 | |
| RSS bytes | 2096103424 (1999 MiB) | |
| Wall seconds limit | 171000 (47 hours) | |
| Inner Apptainer? | True | |
| Job state | jobscript_error | |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk | |
| Started | 2024-11-21 15:21:09 | |
| Input files | hd-protodune:np04hd_raw_run028023_0139_dataflow7_datawriter_0_20240716T174027.hdf5 hd-protodune:np04hd_raw_run028023_0126_dataflow1_datawriter_0_20240716T172307.hdf5 hd-protodune:np04hd_raw_run028023_0126_dataflow4_datawriter_0_20240716T172307.hdf5 hd-protodune:np04hd_raw_run028023_0127_dataflow2_datawriter_0_20240716T172421.hdf5 hd-protodune:np04hd_raw_run028023_0127_dataflow7_datawriter_0_20240716T172423.hdf5 | |
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) | |
| CPU time | 0m (0s = 0%) | |
| Outputting started | ||
| Output files | ||
| Finished | 2024-11-21 15:54:42 | |
| Saved logs | justin-logs:298892.72-justin-prod-sched01.dune.hep.ac.uk.logs.tgz | |
| List job events Wrapper job log | ||
Jobscript log (last 10,000 characters)
F
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
%MSG-w BeamEvent: BeamEvent:beamevent@BeginModule 21-Nov-2024 15:53:54 UTC run: 28023 subRun: 1 event: 36919 BeamEvent_module.cc:1828
Could not get XCET1 info
%MSG
%MSG-w BeamEvent: BeamEvent:beamevent@BeginModule 21-Nov-2024 15:53:54 UTC run: 28023 subRun: 1 event: 36919 BeamEvent_module.cc:1846
Could not get XCET2 info
%MSG
Timing trigger: 12
Matched: 1
CKovs: 0 0
TOF, P: 99.58 1.07251
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 95.2569 -1
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 96.96 -1
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 97.2002 1.05156
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 94.1074 0.913851
Timing trigger: 12
Matched: 1
CKovs: 0 0
TOF, P: 96.2577 1.06204
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5F.c line 620 in H5Fopen(): unable to open file
major: File accessibility
minor: Unable to open file
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 3501 in H5VL_file_open(): failed to iterate over available VOL connector plugins
major: Virtual Object Layer
minor: Iteration failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PLpath.c line 578 in H5PL__path_table_iterate(): can't iterate over plugins in plugin path '(null)'
major: Plugin for dynamically loaded library
minor: Iteration failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PLpath.c line 620 in H5PL__path_table_iterate_process_path(): can't open directory: /usr/local/hdf5/lib/plugin
major: Plugin for dynamically loaded library
minor: Can't open directory or file
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 3351 in H5VL__file_open(): open failed
major: Virtual Object Layer
minor: Can't open object
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_file.c line 97 in H5VL__native_file_open(): unable to open file
major: File accessibility
minor: Unable to open file
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fint.c line 1834 in H5F_open(): unable to open file: name = 'root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/58/97/np04hd_raw_run028023_0126_dataflow1_datawriter_0_20240716T172307.hdf5', tent_flags = 0
major: File accessibility
minor: Unable to open file
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FD.c line 723 in H5FD_open(): open failed
major: Virtual File Layer
minor: Unable to initialize object
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 352 in H5FD__sec2_open(): unable to open file: name = 'root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/58/97/np04hd_raw_run028023_0126_dataflow1_datawriter_0_20240716T172307.hdf5', errno = 52, error message = 'Invalid exchange', flags = 0, o_flags = 0
major: File accessibility
minor: Unable to open file
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 4.34135 57.5169 1750.47 4.60443 299.275 33
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 8.186e-06 1.90182e-05 0.000117312 1.5148e-05 1.81901e-05 33
produce:triggerrawdecoder:PDHDTriggerReader3 3.42635 3.72746 4.34117 3.68826 0.194581 33
produce:ctbrawdecoder:PDHDCTBRawDecoder 0.612184 0.710721 0.902089 0.735455 0.0879778 33
produce:timingrawdecoder:PDHDTimingRawDecoder 0.122541 0.122914 0.124761 0.122784 0.000408456 33
produce:beamevent:BeamEvent 0.00010058 52.8885 1745.18 0.000659569 299.157 33
[art]:TriggerResults:TriggerResultInserter 6.191e-06 1.20563e-05 5.7359e-05 9.598e-06 8.57756e-06 33
end_path:out1:RootOutput 1.152e-06 4.08021e-06 2.8003e-05 3.567e-06 4.42472e-06 33
end_path:out1:RootOutput(write) 0.0371258 0.0671233 0.100133 0.0668846 0.0143092 33
===================================================================================================================================
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 4.34135 57.5169 1750.47 4.60443 299.275 33
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 8.186e-06 1.90182e-05 0.000117312 1.5148e-05 1.81901e-05 33
produce:triggerrawdecoder:PDHDTriggerReader3 3.42635 3.72746 4.34117 3.68826 0.194581 33
produce:ctbrawdecoder:PDHDCTBRawDecoder 0.612184 0.710721 0.902089 0.735455 0.0879778 33
produce:timingrawdecoder:PDHDTimingRawDecoder 0.122541 0.122914 0.124761 0.122784 0.000408456 33
produce:beamevent:BeamEvent 0.00010058 52.8885 1745.18 0.000659569 299.157 33
[art]:TriggerResults:TriggerResultInserter 6.191e-06 1.20563e-05 5.7359e-05 9.598e-06 8.57756e-06 33
end_path:out1:RootOutput 1.152e-06 4.08021e-06 2.8003e-05 3.567e-06 4.42472e-06 33
end_path:out1:RootOutput(write) 0.0371258 0.0671233 0.100133 0.0668846 0.0143092 33
===================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 1366.42 MB
Peak resident set size usage (VmHWM): 447.82 MB
====================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 1366.42 MB
Peak resident set size usage (VmHWM): 447.82 MB
====================================================================================================
TrigReport ---------- Event summary -------------
TrigReport Events total = 33 passed = 33 failed = 0
TrigReport ---------- Modules in End-path ----------
TrigReport Run Success Error Name
TrigReport 33 33 0 out1
TimeReport ---------- Time summary [sec] -------
TimeReport CPU = 3.773006 Real = 1996.330808
MemReport ---------- Memory summary [base-10 MB] ------
MemReport VmPeak = 1366.42 VmHWM = 447.82
%MSG-s ArtException: PostEndJob 21-Nov-2024 15:54:32 UTC ModuleEndJob
---- HDF5RawDataFile BEGIN
File open failure: root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/58/97/np04hd_raw_run028023_0126_dataflow1_datawriter_0_20240716T172307.hdf5 Unable to open file root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/58/97/np04hd_raw_run028023_0126_dataflow1_datawriter_0_20240716T172307.hdf5 (File accessibility) Unable to open file
---- HDF5RawDataFile END
%MSG
%MSG-s ArtException: PostEndJob 21-Nov-2024 15:54:32 UTC ModuleEndJob
---- HDF5RawDataFile BEGIN
File open failure: root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/58/97/np04hd_raw_run028023_0126_dataflow1_datawriter_0_20240716T172307.hdf5 Unable to open file root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/58/97/np04hd_raw_run028023_0126_dataflow1_datawriter_0_20240716T172307.hdf5 (File accessibility) Unable to open file
---- HDF5RawDataFile END
%MSG
Art has completed and will exit with status 1.