Jobsub ID 298892.106@justin-prod-sched01.dune.hep.ac.uk
| Jobsub ID | 298892.106@justin-prod-sched01.dune.hep.ac.uk | |
| Workflow ID | 4201 | |
| Stage ID | 1 | |
| User name | calcuttj@fnal.gov | |
| HTCondor Group | group_dune | |
| Requested | Processors | 1 |
| RSS bytes | 2096103424 (1999 MiB) | |
| Wall seconds limit | 80000 (22 hours) | |
| Submitted time | 2024-11-21 14:44:04 | |
| Site | US_FNAL-T1 | |
| Entry | CMSHTPC_T1_US_FNAL_condce_opp1_whole | |
| Last heartbeat | 2024-11-21 15:49:05 | |
| From worker node | Hostname | dunegli-36992-0-cmswn4057.fnal.gov |
| cpuinfo | AMD EPYC 7543 32-Core Processor | |
| OS release | Scientific Linux release 7.9 (Nitrogen) | |
| Processors | 1 | |
| RSS bytes | 2096103424 (1999 MiB) | |
| Wall seconds limit | 171000 (47 hours) | |
| Inner Apptainer? | True | |
| Job state | jobscript_error | |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk | |
| Started | 2024-11-21 15:21:44 | |
| Input files | hd-protodune:np04hd_raw_run028023_0226_dataflow5_datawriter_0_20240716T193042.hdf5 hd-protodune:np04hd_raw_run028023_0225_dataflow2_datawriter_0_20240716T192921.hdf5 hd-protodune:np04hd_raw_run028023_0164_dataflow5_datawriter_0_20240716T181218.hdf5 hd-protodune:np04hd_raw_run028023_0198_dataflow2_datawriter_0_20240716T185452.hdf5 hd-protodune:np04hd_raw_run028023_0164_dataflow1_datawriter_0_20240716T181218.hdf5 | |
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) | |
| CPU time | 0m (0s = 0%) | |
| Outputting started | ||
| Output files | ||
| Finished | 2024-11-21 15:49:05 | |
| Saved logs | justin-logs:298892.106-justin-prod-sched01.dune.hep.ac.uk.logs.tgz | |
| List job events Wrapper job log | ||
Jobscript log (last 10,000 characters)
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%MSG-w BeamEvent: BeamEvent:beamevent@BeginModule 21-Nov-2024 15:48:44 UTC run: 28023 subRun: 1 event: 59618 BeamEvent_module.cc:1828
Could not get XCET1 info
%MSG
%MSG-w BeamEvent: BeamEvent:beamevent@BeginModule 21-Nov-2024 15:48:44 UTC run: 28023 subRun: 1 event: 59618 BeamEvent_module.cc:1846
Could not get XCET2 info
%MSG
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 96.6377 1.02306
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 93.7832 0.933203
Timing trigger: 12
Matched: 1
CKovs: 0 0
TOF, P: 96.3096 1.04312
Timing trigger: 12
Matched: 1
CKovs: 0 0
TOF, P: 97.3124 0.951558
Timing trigger: 12
Matched: 1
CKovs: 1 0
TOF, P: 96.664 0.979335
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: -1 1.03053
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5F.c line 620 in H5Fopen(): unable to open file
major: File accessibility
minor: Unable to open file
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 3501 in H5VL_file_open(): failed to iterate over available VOL connector plugins
major: Virtual Object Layer
minor: Iteration failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PLpath.c line 578 in H5PL__path_table_iterate(): can't iterate over plugins in plugin path '(null)'
major: Plugin for dynamically loaded library
minor: Iteration failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PLpath.c line 620 in H5PL__path_table_iterate_process_path(): can't open directory: /usr/local/hdf5/lib/plugin
major: Plugin for dynamically loaded library
minor: Can't open directory or file
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 3351 in H5VL__file_open(): open failed
major: Virtual Object Layer
minor: Can't open object
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_file.c line 97 in H5VL__native_file_open(): unable to open file
major: File accessibility
minor: Unable to open file
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fint.c line 1834 in H5F_open(): unable to open file: name = 'root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/79/79/np04hd_raw_run028023_0164_dataflow5_datawriter_0_20240716T181218.hdf5', tent_flags = 0
major: File accessibility
minor: Unable to open file
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FD.c line 723 in H5FD_open(): open failed
major: Virtual File Layer
minor: Unable to initialize object
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 352 in H5FD__sec2_open(): unable to open file: name = 'root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/79/79/np04hd_raw_run028023_0164_dataflow5_datawriter_0_20240716T181218.hdf5', errno = 52, error message = 'Invalid exchange', flags = 0, o_flags = 0
major: File accessibility
minor: Unable to open file
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 1.03623 23.5656 1161.89 1.2474 146.251 66
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 7.074e-06 1.49907e-05 6.2838e-05 1.327e-05 7.49506e-06 66
produce:triggerrawdecoder:PDHDTriggerReader3 0.752933 0.98346 1.33126 0.977684 0.110191 66
produce:ctbrawdecoder:PDHDCTBRawDecoder 0.125572 0.174702 0.616426 0.1529 0.0652486 66
produce:timingrawdecoder:PDHDTimingRawDecoder 0.0251112 0.0256407 0.0271357 0.0256034 0.000312622 66
produce:beamevent:BeamEvent 6.5153e-05 22.3207 1160.55 0.00062388 146.241 66
[art]:TriggerResults:TriggerResultInserter 5.38e-06 1.0057e-05 3.7831e-05 1.01835e-05 4.48017e-06 66
end_path:out1:RootOutput 7.41e-07 2.78614e-06 1.8034e-05 1.658e-06 2.50933e-06 66
end_path:out1:RootOutput(write) 0.0366923 0.0609451 0.088141 0.0591676 0.0128782 66
===================================================================================================================================
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 1.03623 23.5656 1161.89 1.2474 146.251 66
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 7.074e-06 1.49907e-05 6.2838e-05 1.327e-05 7.49506e-06 66
produce:triggerrawdecoder:PDHDTriggerReader3 0.752933 0.98346 1.33126 0.977684 0.110191 66
produce:ctbrawdecoder:PDHDCTBRawDecoder 0.125572 0.174702 0.616426 0.1529 0.0652486 66
produce:timingrawdecoder:PDHDTimingRawDecoder 0.0251112 0.0256407 0.0271357 0.0256034 0.000312622 66
produce:beamevent:BeamEvent 6.5153e-05 22.3207 1160.55 0.00062388 146.241 66
[art]:TriggerResults:TriggerResultInserter 5.38e-06 1.0057e-05 3.7831e-05 1.01835e-05 4.48017e-06 66
end_path:out1:RootOutput 7.41e-07 2.78614e-06 1.8034e-05 1.658e-06 2.50933e-06 66
end_path:out1:RootOutput(write) 0.0366923 0.0609451 0.088141 0.0591676 0.0128782 66
===================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 1382.1 MB
Peak resident set size usage (VmHWM): 462.299 MB
====================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 1382.1 MB
Peak resident set size usage (VmHWM): 462.299 MB
====================================================================================================
TrigReport ---------- Event summary -------------
TrigReport Events total = 66 passed = 66 failed = 0
TrigReport ---------- Modules in End-path ----------
TrigReport Run Success Error Name
TrigReport 66 66 0 out1
TimeReport ---------- Time summary [sec] -------
TimeReport CPU = 6.623748 Real = 1626.325815
MemReport ---------- Memory summary [base-10 MB] ------
MemReport VmPeak = 1382.1 VmHWM = 462.299
%MSG-s ArtException: PostEndJob 21-Nov-2024 15:48:57 UTC ModuleEndJob
---- HDF5RawDataFile BEGIN
File open failure: root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/79/79/np04hd_raw_run028023_0164_dataflow5_datawriter_0_20240716T181218.hdf5 Unable to open file root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/79/79/np04hd_raw_run028023_0164_dataflow5_datawriter_0_20240716T181218.hdf5 (File accessibility) Unable to open file
---- HDF5RawDataFile END
%MSG
%MSG-s ArtException: PostEndJob 21-Nov-2024 15:48:57 UTC ModuleEndJob
---- HDF5RawDataFile BEGIN
File open failure: root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/79/79/np04hd_raw_run028023_0164_dataflow5_datawriter_0_20240716T181218.hdf5 Unable to open file root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/79/79/np04hd_raw_run028023_0164_dataflow5_datawriter_0_20240716T181218.hdf5 (File accessibility) Unable to open file
---- HDF5RawDataFile END
%MSG
Art has completed and will exit with status 1.