Jobsub ID 298405.181@justin-prod-sched01.dune.hep.ac.uk
| Jobsub ID | 298405.181@justin-prod-sched01.dune.hep.ac.uk | |
| Workflow ID | 4190 | |
| Stage ID | 1 | |
| User name | calcuttj@fnal.gov | |
| HTCondor Group | group_dune | |
| Requested | Processors | 1 |
| RSS bytes | 2096103424 (1999 MiB) | |
| Wall seconds limit | 80000 (22 hours) | |
| Submitted time | 2024-11-21 04:09:51 | |
| Site | NL_NIKHEF | |
| Entry | VIRGO_NL_NIKHEF_juk | |
| Last heartbeat | 2024-11-21 06:34:57 | |
| From worker node | Hostname | wn-lot-028.farm.nikhef.nl |
| cpuinfo | AMD EPYC 7702P 64-Core Processor | |
| OS release | Scientific Linux release 7.9 (Nitrogen) | |
| Processors | 1 | |
| RSS bytes | 2096103424 (1999 MiB) | |
| Wall seconds limit | 129600 (36 hours) | |
| Inner Apptainer? | True | |
| Job state | jobscript_error | |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk | |
| Started | 2024-11-21 04:16:51 | |
| Input files | hd-protodune:np04hd_raw_run028707_1006_dataflow5_datawriter_0_20240816T015021.hdf5 hd-protodune:np04hd_raw_run028707_1005_dataflow0_datawriter_0_20240816T014931.hdf5 hd-protodune:np04hd_raw_run028707_1003_dataflow4_datawriter_0_20240816T014817.hdf5 hd-protodune:np04hd_raw_run028707_1003_dataflow0_datawriter_0_20240816T014821.hdf5 hd-protodune:np04hd_raw_run028707_1005_dataflow4_datawriter_0_20240816T014930.hdf5 | |
| Jobscript | Exit code | 139 |
| Real time | 0m (0s) | |
| CPU time | 0m (0s = 0%) | |
| Outputting started | ||
| Output files | ||
| Finished | 2024-11-21 06:34:57 | |
| Saved logs | justin-logs:298405.181-justin-prod-sched01.dune.hep.ac.uk.logs.tgz | |
| List job events Wrapper job log | ||
Jobscript log (last 10,000 characters)
WARNING: NONZERO HALF
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[Thu Nov 21 06:54:56 2024] perform_with_timeout: curl_easy_perform() failed: 'SSL connect error'
[Thu Nov 21 06:54:56 2024] perform_with_timeout: URL='https://ifb-data.fnal.gov:8104/ifbeam/data/data?b=DUNE_CERN_SEP2018_TIMBER&t0=1723773000.000&t1=1723773180.000&f=csv'
[Thu Nov 21 06:54:56 2024] perform_with_timeout: rc=35, try=3, delay=3, t0=1732168283, dt=213 timeout=1200
[Thu Nov 21 07:09:01 2024] perform_with_timeout: curl_easy_perform() failed: 'Server returned nothing (no headers, no data)'
[Thu Nov 21 07:09:01 2024] perform_with_timeout: URL='https://ifb-data.fnal.gov:8104/ifbeam/data/data?b=DUNE_CERN_SEP2018_TIMBER&t0=1723773000.000&t1=1723773180.000&f=csv'
[Thu Nov 21 07:09:01 2024] perform_with_timeout: rc=52, try=10, delay=505, t0=1732168283, dt=1058 timeout=1200
%MSG-w BeamEvent: BeamEvent:beamevent@BeginModule 21-Nov-2024 07:32:47 CET run: 28707 subRun: 1 event: 241436 BeamEvent_module.cc:1828
Could not get XCET1 info
%MSG
[Thu Nov 21 07:32:48 2024] perform_with_timeout: curl_easy_perform() failed: 'Server returned nothing (no headers, no data)'
[Thu Nov 21 07:32:48 2024] perform_with_timeout: URL='https://ifb-data.fnal.gov:8104/ifbeam/data/data?b=DUNE_CERN_SEP2018_TIMBER&t0=1723773000.000&t1=1723773180.000&f=csv'
[Thu Nov 21 07:32:48 2024] perform_with_timeout: rc=52, try=0, delay=0, t0=1732170767, dt=0 timeout=1200
%MSG-w BeamEvent: BeamEvent:beamevent@BeginModule 21-Nov-2024 07:33:30 CET run: 28707 subRun: 1 event: 241436 BeamEvent_module.cc:1846
Could not get XCET2 info
%MSG
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 93.0547 5.67157
21-Nov-2024 07:33:31 CET Closed output file "np04hd_raw_run028707_1005_dataflow4_datawriter_0_20240816T014930_beam.root"
21-Nov-2024 07:33:31 CET Closed output file "np04hd_raw_run028707_1005_dataflow4_datawriter_0_20240816T014930_beam.root"
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5I.c line 456 in H5Idec_ref(): can't decrement ID ref count
major: Object atom
minor: Unable to decrement reference count
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Iint.c line 1018 in H5I_dec_app_ref(): can't decrement ID ref count
major: Object atom
minor: Unable to decrement reference count
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fint.c line 251 in H5F__close_cb(): unable to close file
major: File accessibility
minor: Unable to close file
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 3983 in H5VL_file_close(): file close failed
major: Virtual Object Layer
minor: Unable to close file
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 3952 in H5VL__file_close(): file close failed
major: Virtual Object Layer
minor: Unable to close file
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_file.c line 838 in H5VL__native_file_close(): can't close file
major: File accessibility
minor: Unable to decrement reference count
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fint.c line 2349 in H5F__close(): can't close file
major: File accessibility
minor: Unable to close file
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fint.c line 2522 in H5F_try_close(): problems closing file
major: File accessibility
minor: Unable to close file
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fint.c line 1605 in H5F__dest(): unable to close file
major: File accessibility
minor: Unable to close file
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FD.c line 830 in H5FD_close(): close failed
major: Virtual File Layer
minor: Unable to close file
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 456 in H5FD__sec2_close(): unable to close file, errno = 110, error message = 'Connection timed out'
major: Low-level I/O
minor: Unable to close file
HighFive::~Object: reference counter decrease failure
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 0.682925 54.1961 4687.42 0.773111 412.489 150
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 1.4107e-05 2.10812e-05 6.5924e-05 2.0939e-05 4.43508e-06 150
produce:triggerrawdecoder:PDHDTriggerReader3 0.473784 0.541179 0.655446 0.531598 0.0398976 150
produce:ctbrawdecoder:PDHDCTBRawDecoder 0.0851866 0.0985154 0.189128 0.0933169 0.015299 150
produce:timingrawdecoder:PDHDTimingRawDecoder 0.017048 0.0173398 0.0175952 0.0173441 0.000100134 150
produce:beamevent:BeamEvent 0.000685222 53.4292 4686.66 0.00756756 412.487 150
[art]:TriggerResults:TriggerResultInserter 1.0399e-05 1.50855e-05 4.5385e-05 1.4788e-05 3.52819e-06 150
end_path:out1:RootOutput 2.625e-06 3.36566e-06 1.6501e-05 3.261e-06 1.12485e-06 150
end_path:out1:RootOutput(write) 0.0588316 0.109504 0.228051 0.109189 0.0215273 150
===================================================================================================================================
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 0.682925 54.1961 4687.42 0.773111 412.489 150
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 1.4107e-05 2.10812e-05 6.5924e-05 2.0939e-05 4.43508e-06 150
produce:triggerrawdecoder:PDHDTriggerReader3 0.473784 0.541179 0.655446 0.531598 0.0398976 150
produce:ctbrawdecoder:PDHDCTBRawDecoder 0.0851866 0.0985154 0.189128 0.0933169 0.015299 150
produce:timingrawdecoder:PDHDTimingRawDecoder 0.017048 0.0173398 0.0175952 0.0173441 0.000100134 150
produce:beamevent:BeamEvent 0.000685222 53.4292 4686.66 0.00756756 412.487 150
[art]:TriggerResults:TriggerResultInserter 1.0399e-05 1.50855e-05 4.5385e-05 1.4788e-05 3.52819e-06 150
end_path:out1:RootOutput 2.625e-06 3.36566e-06 1.6501e-05 3.261e-06 1.12485e-06 150
end_path:out1:RootOutput(write) 0.0588316 0.109504 0.228051 0.109189 0.0215273 150
===================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 1615.79 MB
Peak resident set size usage (VmHWM): 792.027 MB
====================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 1615.79 MB
Peak resident set size usage (VmHWM): 792.027 MB
====================================================================================================
TrigReport ---------- Event summary -------------
TrigReport Events total = 150 passed = 150 failed = 0
TrigReport ---------- Modules in End-path ----------
TrigReport Run Success Error Name
TrigReport 150 150 0 out1
TimeReport ---------- Time summary [sec] -------
TimeReport CPU = 29.473463 Real = 8265.174270
MemReport ---------- Memory summary [base-10 MB] ------
MemReport VmPeak = 1615.79 VmHWM = 792.027