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Jobsub ID 298094.66@justin-prod-sched01.dune.hep.ac.uk

Jobsub ID298094.66@justin-prod-sched01.dune.hep.ac.uk
Workflow ID4182
Stage ID1
User namecalcuttj@fnal.gov
HTCondor Groupgroup_dune
RequestedProcessors1
RSS bytes2096103424 (1999 MiB)
Wall seconds limit80000 (22 hours)
Submitted time2024-11-20 19:23:34
SiteUS_FNAL-T1
EntryCMSHTPC_T1_US_FNAL_condce_opp1_whole
Last heartbeat2024-11-20 20:40:54
From worker nodeHostnamedunegli-36971-0-cmswn3035.fnal.gov
cpuinfoAMD EPYC 7542 32-Core Processor
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors1
RSS bytes2096103424 (1999 MiB)
Wall seconds limit171000 (47 hours)
Inner Apptainer?True
Job statejobscript_error
Allocator namejustin-allocator-pro.dune.hep.ac.uk
Started2024-11-20 20:40:30
Input fileshd-protodune:np04hd_raw_run028072_1144_dataflow2_datawriter_0_20240720T043644.hdf5
hd-protodune:np04hd_raw_run028072_1038_dataflow7_datawriter_0_20240720T035105.hdf5
hd-protodune:np04hd_raw_run028072_1143_dataflow3_datawriter_0_20240720T043616.hdf5
hd-protodune:np04hd_raw_run028072_1038_dataflow4_datawriter_0_20240720T035105.hdf5
hd-protodune:np04hd_raw_run028072_1143_dataflow1_datawriter_0_20240720T043616.hdf5
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Outputting started 
Output files
Finished2024-11-20 20:40:54
Saved logsjustin-logs:298094.66-justin-prod-sched01.dune.hep.ac.uk.logs.tgz
List job events     Wrapper job log

Jobscript log (last 10,000 characters)

STIN_WALL_SECONDS=80000
JUSTIN_ALLOCATOR=https://justin-allocator-pro.dune.hep.ac.uk/api/allocator/
JUSTIN_SITE_NAME=US_FNAL-T1
JUSTIN_SAM_WEB_URI=https://justin.dune.hep.ac.uk/api/samweb/298094.66@justin-prod-sched01.dune.hep.ac.uk/0aHtp5J-OlMCPEUGyTOm4xRi7GRpESFTf08K7HBH83jN00Y3OPPBXmMs7PAMAjrFq7b2Di37HbgIaIqizPc5VQ
JUSTIN_PROCESSORS=1
JUSTIN_JOBSCRIPT_SECRET=0aHtp5J-OlMCPEUGyTOm4xRi7GRpESFTf08K7HBH83jN00Y3OPPBXmMs7PAMAjrFq7b2Di37HbgIaIqizPc5VQ
JUSTIN_PATH=/home
JUSTIN_TIMESTAMP=1732135230
JUSTIN_JOBSUB_ID=298094.66@justin-prod-sched01.dune.hep.ac.uk
JUSTIN_WORKFLOW_ID=4182
JUSTIN_STAGE_ID=1
JUSTIN_RSS_MIB=1999
Will use justin-get-file
Return code 0
Stdout b'hd-protodune:np04hd_raw_run028072_1144_dataflow2_datawriter_0_20240720T043644.hdf5 root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/ed/4f/np04hd_raw_run028072_1144_dataflow2_datawriter_0_20240720T043644.hdf5 DUNE_US_BNL_SDCC'
Stderr b''
Return code 0
Stdout b'hd-protodune:np04hd_raw_run028072_1038_dataflow7_datawriter_0_20240720T035105.hdf5 root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/07/10/np04hd_raw_run028072_1038_dataflow7_datawriter_0_20240720T035105.hdf5 DUNE_US_BNL_SDCC'
Stderr b''
Return code 0
Stdout b'hd-protodune:np04hd_raw_run028072_1143_dataflow3_datawriter_0_20240720T043616.hdf5 root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/6f/28/np04hd_raw_run028072_1143_dataflow3_datawriter_0_20240720T043616.hdf5 DUNE_US_BNL_SDCC'
Stderr b''
Return code 0
Stdout b'hd-protodune:np04hd_raw_run028072_1038_dataflow4_datawriter_0_20240720T035105.hdf5 root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/01/ef/np04hd_raw_run028072_1038_dataflow4_datawriter_0_20240720T035105.hdf5 DUNE_US_BNL_SDCC'
Stderr b''
Return code 0
Stdout b'hd-protodune:np04hd_raw_run028072_1143_dataflow1_datawriter_0_20240720T043616.hdf5 root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/1d/64/np04hd_raw_run028072_1143_dataflow1_datawriter_0_20240720T043616.hdf5 DUNE_US_BNL_SDCC'
Stderr b''
root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/ed/4f/np04hd_raw_run028072_1144_dataflow2_datawriter_0_20240720T043644.hdf5 root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/07/10/np04hd_raw_run028072_1038_dataflow7_datawriter_0_20240720T035105.hdf5 root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/6f/28/np04hd_raw_run028072_1143_dataflow3_datawriter_0_20240720T043616.hdf5 root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/01/ef/np04hd_raw_run028072_1038_dataflow4_datawriter_0_20240720T035105.hdf5 root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/1d/64/np04hd_raw_run028072_1143_dataflow1_datawriter_0_20240720T043616.hdf5
Files retrieved: 5
PFN list:
root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/ed/4f/np04hd_raw_run028072_1144_dataflow2_datawriter_0_20240720T043644.hdf5 root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/07/10/np04hd_raw_run028072_1038_dataflow7_datawriter_0_20240720T035105.hdf5 root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/6f/28/np04hd_raw_run028072_1143_dataflow3_datawriter_0_20240720T043616.hdf5 root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/01/ef/np04hd_raw_run028072_1038_dataflow4_datawriter_0_20240720T035105.hdf5 root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/1d/64/np04hd_raw_run028072_1143_dataflow1_datawriter_0_20240720T043616.hdf5
Running pdspana
Error in ntuple production
%MSG-i MF_INIT_OK:  Early 20-Nov-2024 20:40:37 UTC JobSetup
Messagelogger initialization complete.
%MSG
Factor: 1.6e-08
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
  #000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5F.c line 620 in H5Fopen(): unable to open file
    major: File accessibility
    minor: Unable to open file
  #001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 3501 in H5VL_file_open(): failed to iterate over available VOL connector plugins
    major: Virtual Object Layer
    minor: Iteration failed
  #002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PLpath.c line 578 in H5PL__path_table_iterate(): can't iterate over plugins in plugin path '(null)'
    major: Plugin for dynamically loaded library
    minor: Iteration failed
  #003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PLpath.c line 620 in H5PL__path_table_iterate_process_path(): can't open directory: /usr/local/hdf5/lib/plugin
    major: Plugin for dynamically loaded library
    minor: Can't open directory or file
  #004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 3351 in H5VL__file_open(): open failed
    major: Virtual Object Layer
    minor: Can't open object
  #005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_file.c line 97 in H5VL__native_file_open(): unable to open file
    major: File accessibility
    minor: Unable to open file
  #006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fint.c line 1834 in H5F_open(): unable to open file: name = 'root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/ed/4f/np04hd_raw_run028072_1144_dataflow2_datawriter_0_20240720T043644.hdf5', tent_flags = 0
    major: File accessibility
    minor: Unable to open file
  #007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FD.c line 723 in H5FD_open(): open failed
    major: Virtual File Layer
    minor: Unable to initialize object
  #008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 352 in H5FD__sec2_open(): unable to open file: name = 'root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/ed/4f/np04hd_raw_run028072_1144_dataflow2_datawriter_0_20240720T043644.hdf5', errno = 52, error message = 'Invalid exchange', flags = 0, o_flags = 0
    major: File accessibility
    minor: Unable to open file

====================================================================================================================
TimeTracker printout (sec)            Min           Avg           Max         Median          RMS         nEvts   
====================================================================================================================
[ No processed events ]
====================================================================================================================

====================================================================================================================
TimeTracker printout (sec)            Min           Avg           Max         Median          RMS         nEvts   
====================================================================================================================
[ No processed events ]
====================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 1336.41 MB
  Peak resident set size usage (VmHWM): 328.147 MB
====================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 1336.41 MB
  Peak resident set size usage (VmHWM): 328.147 MB
====================================================================================================

TrigReport ---------- Event summary -------------
TrigReport Events total = 0 passed = 0 failed = 0

TrigReport ---------- Modules in End-path ----------
TrigReport        Run    Success      Error Name
TrigReport          0          0          0 out1

TimeReport ---------- Time summary [sec] -------
TimeReport CPU = 1.447386 Real = 3.869244

MemReport  ---------- Memory summary [base-10 MB] ------
MemReport  VmPeak = 1336.41 VmHWM = 328.147

%MSG-s ArtException:  PostEndJob 20-Nov-2024 20:40:43 UTC ModuleEndJob
---- HDF5RawDataFile BEGIN
   File open failure: root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/ed/4f/np04hd_raw_run028072_1144_dataflow2_datawriter_0_20240720T043644.hdf5 Unable to open file root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/ed/4f/np04hd_raw_run028072_1144_dataflow2_datawriter_0_20240720T043644.hdf5 (File accessibility) Unable to open file
---- HDF5RawDataFile END
%MSG
%MSG-s ArtException:  PostEndJob 20-Nov-2024 20:40:43 UTC ModuleEndJob
---- HDF5RawDataFile BEGIN
   File open failure: root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/ed/4f/np04hd_raw_run028072_1144_dataflow2_datawriter_0_20240720T043644.hdf5 Unable to open file root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/ed/4f/np04hd_raw_run028072_1144_dataflow2_datawriter_0_20240720T043644.hdf5 (File accessibility) Unable to open file
---- HDF5RawDataFile END
%MSG
Art has completed and will exit with status 1.
justIN time: 2024-11-23 11:11:23 UTC       justIN version: 01.01.09