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Jobsub ID 290723.1@justin-prod-sched01.dune.hep.ac.uk

Jobsub ID290723.1@justin-prod-sched01.dune.hep.ac.uk
Workflow ID4103
Stage ID1
User nameamoor@fnal.gov
HTCondor Groupgroup_dune
RequestedProcessors1
RSS bytes8388608000 (8000 MiB)
Wall seconds limit80000 (22 hours)
Submitted time2024-11-15 15:30:32
SiteUS_Colorado
EntryCMSHTPC_T3_US_Colorado_heposg01-colorado
Last heartbeat2024-11-15 20:23:33
From worker nodeHostnamelnxfarm260.colorado.edu
cpuinfoIntel(R) Core(TM) i7 CPU 950 @ 3.07GHz
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors1
RSS bytes8388608000 (8000 MiB)
Wall seconds limit171000 (47 hours)
Inner Apptainer?True
Job stateoutputting_failed
Allocator namejustin-allocator-pro.dune.hep.ac.uk
Started2024-11-15 15:32:01
Input filesusertests:000375_reco_data_2024-11-14T_092942Z.root
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Outputting started 
Output files
Finished2024-11-15 20:23:33
List job events     Wrapper job log

Jobscript log (last 10,000 characters)

AFM g4 jobscript.
Input PFN = root://fndca1.fnal.gov:1094/pnfs/fnal.gov/usr/dune/persistent/staging/usertests/60/df/000375_reco_data_2024-11-14T_092942Z.root
Setting up larsoft UPS area... /cvmfs/larsoft.opensciencegrid.org
Setting up DUNE UPS area... /cvmfs/dune.opensciencegrid.org/products/dune/
/cvmfs/larsoft.opensciencegrid.org/products/xrootd/v5_4_3b/Linux64bit+3.10-2.17-e20-p3913-prof/lib/libXrdPosixPreload.so
../justin-jobscript: line 72:  1126 Segmentation fault      (core dumped) lar -c $FCL_FILE $events_option -o $outFile "$pfn" > ${fname}_reco_${now}.log 2>&1
=== Start last 100 lines of lar log file ===
%MSG-i generatePrimaries:  larg4Main:largeant@BeginModule  15-Nov-2024 09:42:16 MST run: 20000031 subRun: 0 event: 655 MCTruthEventAction.cc:112
Generating 1 particles
%MSG
%MSG-i ParticleListActionService:  larg4Main:largeant@BeginModule  15-Nov-2024 09:42:16 MST run: 20000031 subRun: 0 event: 655
Not Stored Process summary:
	compt : 10533
	Pair : 28
	annihil : 330
	phot : 3113
	Brem : 2924
	conv : 302
	Ion : 3212
%MSG
%MSG-i endOfEventAction:  larg4Main:largeant@BeginModule  15-Nov-2024 09:42:16 MST run: 20000031 subRun: 0 event: 655 ParticleListAction.cc:701
MCTruth Handles Size: 1
%MSG
%MSG-i endOfEventAction:  larg4Main:largeant@BeginModule  15-Nov-2024 09:42:16 MST run: 20000031 subRun: 0 event: 655 ParticleListAction.cc:708
mclistHandle Size: 1
%MSG
%MSG-i endOfEventAction:  larg4Main:largeant@BeginModule  15-Nov-2024 09:42:16 MST run: 20000031 subRun: 0 event: 655 ParticleListAction.cc:711
Found 1 particles
%MSG
%MSG-i NuRandomService:  IonAndScint:IonAndScint@BeginModule  15-Nov-2024 09:42:16 MST run: 20000031 subRun: 0 event: 655
Random seed for this event, engine 'IonAndScint.ISCalcAlg': 70936157
%MSG
IonAndScint Module Producer
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneUInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneVInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneZInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveOuter
%MSG-i NuRandomService:  SimDriftElectrons:elecDrift@BeginModule  15-Nov-2024 09:42:16 MST run: 20000031 subRun: 0 event: 655
Random seed for this event, engine 'elecDrift': 514734393
%MSG
%MSG-i NuRandomService:  PDFastSimPAR:PDFastSim@BeginModule  15-Nov-2024 09:42:16 MST run: 20000031 subRun: 0 event: 655
Random seed for this event, engine 'PDFastSim.photon': 46521047
%MSG
%MSG-i NuRandomService:  PDFastSimPAR:PDFastSim@BeginModule  15-Nov-2024 09:42:16 MST run: 20000031 subRun: 0 event: 655
Random seed for this event, engine 'PDFastSim.scinttime': 369592035
%MSG
%MSG-w ParticleInventory:  ProcessEvent 15-Nov-2024 09:42:16 MST  run: 20000031 subRun: 0 event: 656
Rebuild failed to get the MCParticles. This is expected when running on a generation or simulation step.
%MSG
%MSG-w ParticleInventory:  ProcessEvent 15-Nov-2024 09:42:16 MST  run: 20000031 subRun: 0 event: 656
Rebuild failed to get the MCParticles. This is expected when running on a generation or simulation step.
%MSG
%MSG-w ParticleInventory:  ProcessEvent 15-Nov-2024 09:42:16 MST  run: 20000031 subRun: 0 event: 656
Rebuild failed to get the MCParticles. This is expected when running on a generation or simulation step.
%MSG
%MSG-w BackTrackerService:  ProcessEvent 15-Nov-2024 09:42:16 MST  run: 20000031 subRun: 0 event: 656
Rebuild failed to get the SimChannels. This is expected when running on a generation or simulation step.
%MSG
%MSG-w PhotonBackTrackerService:  ProcessEvent 15-Nov-2024 09:42:16 MST  run: 20000031 subRun: 0 event: 656
Rebuild failed to get the OpDetBTRs. This is expected when running on a generation or simulation step.
%MSG
%MSG-i NuRandomService:  larg4Main:largeant@BeginModule  15-Nov-2024 09:42:16 MST run: 20000031 subRun: 0 event: 656
Random seed for this event, engine 'largeant': 198088544
%MSG
%MSG-i generatePrimaries:  larg4Main:largeant@BeginModule  15-Nov-2024 09:42:16 MST run: 20000031 subRun: 0 event: 656 MCTruthEventAction.cc:112
Generating 1 particles
%MSG
%MSG-i ParticleListActionService:  larg4Main:largeant@BeginModule  15-Nov-2024 09:45:10 MST run: 20000031 subRun: 0 event: 656
Not Stored Process summary:
	conv : 86284
	Ion : 226952
	compt : 1785431
	Pair : 24
	annihil : 86314
	phot : 576954
	Brem : 529777
%MSG
%MSG-i endOfEventAction:  larg4Main:largeant@BeginModule  15-Nov-2024 09:45:10 MST run: 20000031 subRun: 0 event: 656 ParticleListAction.cc:701
MCTruth Handles Size: 1
%MSG
%MSG-i endOfEventAction:  larg4Main:largeant@BeginModule  15-Nov-2024 09:45:10 MST run: 20000031 subRun: 0 event: 656 ParticleListAction.cc:708
mclistHandle Size: 1
%MSG
%MSG-i endOfEventAction:  larg4Main:largeant@BeginModule  15-Nov-2024 09:45:10 MST run: 20000031 subRun: 0 event: 656 ParticleListAction.cc:711
Found 1 particles
%MSG
%MSG-i NuRandomService:  IonAndScint:IonAndScint@BeginModule  15-Nov-2024 09:45:10 MST run: 20000031 subRun: 0 event: 656
Random seed for this event, engine 'IonAndScint.ISCalcAlg': 396838343
%MSG
IonAndScint Module Producer
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneUInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneVInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneZInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveOuter
%MSG-i NuRandomService:  SimDriftElectrons:elecDrift@BeginModule  15-Nov-2024 09:45:21 MST run: 20000031 subRun: 0 event: 656
Random seed for this event, engine 'elecDrift': 213176949
%MSG
%MSG-i NuRandomService:  PDFastSimPAR:PDFastSim@BeginModule  15-Nov-2024 09:46:45 MST run: 20000031 subRun: 0 event: 656
Random seed for this event, engine 'PDFastSim.photon': 234742479
%MSG
%MSG-i NuRandomService:  PDFastSimPAR:PDFastSim@BeginModule  15-Nov-2024 09:46:45 MST run: 20000031 subRun: 0 event: 656
Random seed for this event, engine 'PDFastSim.scinttime': 546648223
%MSG
=== End last 100 lines of lar log file ===
lar exit code 0
Traceback (most recent call last):
  File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 434, in <module>
    main()
  File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 373, in main
    mddict = expSpecificMetadata.getmetadata()
  File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 344, in getmetadata
    jobt = self.get_job(proc)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 69, in get_job
    raise RuntimeError('sam_metadata_dumper returned nonzero exit status {}.'.format(rc))
RuntimeError: sam_metadata_dumper returned nonzero exit status 1.
extractor_prod.py exit code 1
Error reading metadata from file: Expecting value: line 1 column 1 (char 0)
pdjson2metadata exit code 1
.:
total 1539904
-rw-r--r-- 1 dunepilot gridusers 1574464518 Nov 15 13:22 RootOutput-a14d-9a84-d8b3-fe76.root
-rw-r--r-- 1 dunepilot gridusers    2378780 Nov 15 09:46 000375_reco_data_2024-11-14T_092942Z_reco_2024-11-15T_153237Z.log
-rw-r--r-- 1 dunepilot gridusers       7414 Nov 15 13:23 jobscript.log
-rw-r--r-- 1 dunepilot gridusers        274 Nov 15 08:33 TFileService-6e9f-6a0e-e0c0-4f7b.root
-rw-r--r-- 1 dunepilot gridusers        104 Nov 15 08:32 all-input-dids.txt
-rw-r--r-- 1 dunepilot gridusers          0 Nov 15 13:23 000375_reco_data_2024-11-14T_092942Z_reco_data_2024-11-15T_153237Z.root.ext.json
-rw-r--r-- 1 dunepilot gridusers          0 Nov 15 13:23 000375_reco_data_2024-11-14T_092942Z_reco_data_2024-11-15T_153237Z.root.json
justIN time: 2024-11-17 08:39:07 UTC       justIN version: 01.01.09