Jobsub ID 279719.1@justin-prod-sched01.dune.hep.ac.uk
| Jobsub ID | 279719.1@justin-prod-sched01.dune.hep.ac.uk |
| Workflow ID | 3814 |
| Stage ID | 1 |
| User name | fanjaraz@fnal.gov |
| HTCondor Group | group_dune |
| Requested | Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 80000 (22 hours) |
| Submitted time | 2024-10-24 18:28:50 |
| Site | UK_Manchester |
| Entry | UBoone_T2_UK_Manchester_ce01 |
| Last heartbeat | 2024-10-24 19:01:52 |
| From worker node | Hostname | wn1205241.tier2.hep.manchester.ac.uk |
| cpuinfo | AMD EPYC 7702P 64-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 257400 (71 hours) |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk |
| Started | 2024-10-24 18:30:16 |
| Input files | justin-tutorial:tut_np02bde_307160131_np02_bde_coldbox_run012352_0059_20211216T001800.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Outputting started | |
| Output files | |
| Finished | 2024-10-24 19:01:52 |
| Saved logs | justin-logs:279719.1-justin-prod-sched01.dune.hep.ac.uk.logs.tgz |
| List job events Wrapper job log |
Jobscript log (last 10,000 characters)
:41.518] D [ geom ] <AnodePlane:anode121> face:0, plane:1, origin:(-38.5 840 2238.52) mm
[19:31:41.519] D [ geom ] <AnodePlane:anode121> face:0, plane:2, origin:(-38.5 840 1494.03) mm
[19:31:41.519] D [ geom ] <AnodePlane:anode121> face:0 with 3 planes and sensvol: [(-3000 2.32611 1494.01) --> (150.7 1677.67 2983.02)]
[19:31:41.520] D [ main ] configuring component: "OmnibusSigProc":"anode121sigproc121"
[19:31:41.524] D [sigproc ] <OmnibusSigProc:anode121sigproc121> config: internal channel map for tags: gauss:"gauss121", wiener:"wiener121", frame:"sigproc"
pind0 aid121 fid0 pid0 cid1600 -> cid1983, cind0 -> cind383, (n=384)
pind1 aid121 fid0 pid1 cid2304 -> cid2623, cind0 -> cind319, (n=320)
pind2 aid121 fid0 pid2 cid2624 -> cid3199, cind0 -> cind575, (n=576)
[19:31:41.524] D [ main ] configuring component: "Retagger":""
[19:31:41.524] D [ main ] configuring component: "MegaAnodePlane":"meganodesact"
[19:31:41.524] D [ main ] configuring component: "wclsFrameSaver":"spsaver"
[19:31:41.527] D [ main ] configuring component: "DumpFrames":""
[19:31:41.527] D [ main ] configuring component: "Pgrapher":""
[19:31:41.527] D [ pgraph ] <Pgrapher:> connecting: 16 edges
Inputer: "wclsCookedFrameSource"
Outputer: "wclsFrameSaver:spsaver"
wclsFrameSaver: promising to produce recob::Wires named "gauss"
wclsFrameSaver: promising to produce recob::Wires named "wiener"
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e20/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5F.c line 620 in H5Fopen(): unable to open file
major: File accessibility
minor: Unable to open file
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e20/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 3501 in H5VL_file_open(): failed to iterate over available VOL connector plugins
major: Virtual Object Layer
minor: Iteration failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e20/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PLpath.c line 578 in H5PL__path_table_iterate(): can't iterate over plugins in plugin path '(null)'
major: Plugin for dynamically loaded library
minor: Iteration failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e20/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PLpath.c line 620 in H5PL__path_table_iterate_process_path(): can't open directory: /usr/local/hdf5/lib/plugin
major: Plugin for dynamically loaded library
minor: Can't open directory or file
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e20/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 3351 in H5VL__file_open(): open failed
major: Virtual Object Layer
minor: Can't open object
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e20/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_file.c line 97 in H5VL__native_file_open(): unable to open file
major: File accessibility
minor: Unable to open file
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e20/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fint.c line 1834 in H5F_open(): unable to open file: name = 'root://meitner.tier2.hep.manchester.ac.uk:1094//cephfs/experiments/dune/RSE/justin-tutorial/a8/ae/tut_np02bde_307160131_np02_bde_coldbox_run012352_0059_20211216T001800.hdf5', tent_flags = 0
major: File accessibility
minor: Unable to open file
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e20/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FD.c line 723 in H5FD_open(): open failed
major: Virtual File Layer
minor: Unable to initialize object
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e20/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 352 in H5FD__sec2_open(): unable to open file: name = 'root://meitner.tier2.hep.manchester.ac.uk:1094//cephfs/experiments/dune/RSE/justin-tutorial/a8/ae/tut_np02bde_307160131_np02_bde_coldbox_run012352_0059_20211216T001800.hdf5', errno = 116, error message = 'Stale file handle', flags = 0, o_flags = 0
major: File accessibility
minor: Unable to open file
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e20/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5G.c line 502 in H5Gopen2(): invalid location identifier
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e20/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5G.c line 731 in H5Gclose(): not a group ID
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e20/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5G.c line 502 in H5Gopen2(): invalid location identifier
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e20/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Gdeprec.c line 877 in H5Gget_num_objs(): invalid group (or file) ID
major: Invalid arguments to routine
minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e20/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5G.c line 731 in H5Gclose(): not a group ID
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e20/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5F.c line 707 in H5Fclose(): not a file ID
major: Invalid arguments to routine
minor: Inappropriate type
DataPrepByApaModule::endJob: # events processed: 0
DataPrepByApaModule::endJob: # events skipped: 0
====================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
====================================================================================================================
[ No processed events ]
====================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 2725.64 MB
Peak resident set size usage (VmHWM): 1803.85 MB
Details saved in: 'mem.db'
====================================================================================================
PandoraMonitoring, only able to use default TApplication (limited functionality).
PandoraMonitoring::SaveTree, error: No tree with name 'Validation' exists.
ToolBasedRawDigitPrepService:dtor: Event count: 0
ToolBasedRawDigitPrepService:dtor: Call count: 0
ToolBasedRawDigitPrepService:dtor: Time report for 7 tools.
ToolBasedRawDigitPrepService:dtor: digitReader :0.00 sec
ToolBasedRawDigitPrepService:dtor: vdcb_adcChannelRawRmsFiller :0.00 sec
ToolBasedRawDigitPrepService:dtor: adcSampleFiller :0.00 sec
ToolBasedRawDigitPrepService:dtor: vdbcb_adcScaleAdcToKe :0.00 sec
ToolBasedRawDigitPrepService:dtor: vdbcb_cnrw :0.00 sec
ToolBasedRawDigitPrepService:dtor: adcKeepAllSignalFinder :0.00 sec
ToolBasedRawDigitPrepService:dtor: vdbcb_adcScaleKeToAdc :0.00 sec
Art has completed and will exit with status 0.
=== End last 100 lines of lar log file ===
lar exit code 0
Traceback (most recent call last):
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_00d00/bin/extractor_prod.py", line 434, in <module>
main()
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_00d00/bin/extractor_prod.py", line 373, in main
mddict = expSpecificMetadata.getmetadata()
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_00d00/bin/extractor_prod.py", line 344, in getmetadata
jobt = self.get_job(proc)
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_00d00/bin/extractor_prod.py", line 69, in get_job
raise RuntimeError('sam_metadata_dumper returned nonzero exit status {}.'.format(rc))
RuntimeError: sam_metadata_dumper returned nonzero exit status 1.
extractor_prod.py exit code 1
Error reading metadata from file: Expecting value: line 1 column 1 (char 0)
pdjson2metadata exit code 1
.:
total 108
-rw-r--r-- 1 dune01 dune01 36864 Oct 24 20:01 mem.db
-rw-r--r-- 1 dune01 dune01 30162 Oct 24 20:01 tut_np02bde_307160131_np02_bde_coldbox_run012352_0059_20211216T001800_reco_2024-10-24T_183020Z.log
-rw-r--r-- 1 dune01 dune01 16384 Oct 24 19:31 time.db
-rw-r--r-- 1 dune01 dune01 9538 Oct 24 20:01 jobscript.log
-rw-r--r-- 1 dune01 dune01 519 Oct 24 20:01 tut_np02bde_307160131_np02_bde_coldbox_run012352_0059_20211216T001800_reco_hist.root
-rw-r--r-- 1 dune01 dune01 182 Oct 24 19:30 all-input-dids.txt
-rw-r--r-- 1 dune01 dune01 0 Oct 24 19:31 Pandora_Events.pndr
-rw-r--r-- 1 dune01 dune01 0 Oct 24 19:30 debugprod.log
-rw-r--r-- 1 dune01 dune01 0 Oct 24 20:01 tut_np02bde_307160131_np02_bde_coldbox_run012352_0059_20211216T001800_reco_data_2024-10-24T_183020Z.root.ext.json
-rw-r--r-- 1 dune01 dune01 0 Oct 24 20:01 tut_np02bde_307160131_np02_bde_coldbox_run012352_0059_20211216T001800_reco_data_2024-10-24T_183020Z.root.json 